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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|42567989
Protein type: Transmembrane
Type Confidence: 0.67
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKETEGNAQC YAIFVVFLIN IIVGSHVWIE DPGAAWIDGE VVKINGEEVH AHTTNGKTVV  60
   61 ANIANVFPKD TEAPPGGVDD MTKLSYLHEP GVLNNLAMRY ELNEIYTYTG NILIAVNPFQ 120
  121 RLPHLYDTHM MEQYKGAGFG ELSPHVFAIA EVAYRAMINE GKSNSILVSG ESGAGKTETT 180
  181 KMLMRYLAYL GGRSGVEGRT VEQQVLESNP VLEAFGNAKT LRNNNSSRFG KFVELQFDNC 240
  241 GRISGAAVRT YLLERSRVCQ ISDPERNYHC FYLLCAAPPE EREKFKLGDP KLFHYLNQSK 300
  301 CYKLDGVDDT EEYLATRRAM DIVGISEEEQ DAIFRVVAAI LHLGNVNFAK GKEIDSSVLK 360
  361 DEKSRYHLDV CAELLRCDAK KMEDALIKRV MVTPEEVITR TLDPDSATGS RDALAKTIYS 420
  421 RLFDWLVDKI NNSIGQDPNS KTIIGVLDIY GFESFKINSF EQFCINFTNE KLQQHFNQHV 480
  481 FKMEQEDYTK EEINWSYIEF VDNKDVLELI EKKPGGVIAL LDEACMFPKS THETFAQKLY 540
  541 QTFKNYKRFT KPKLSRTSFA ISHYAGEVTY QADLFLDKNK DYVVAEHQDL LIASSDTFVA 600
  601 GLFPRLPEET SSKTKFSSIG SRFKLQLQSL METLSSTEPH YIRCVKPNNV LKPAIFENVN 660
  661 VIQQLRCGGV LEAIRISCAG YPTKRTFYEF LNRFGVLAPE VLEGNYDDKV ACKMLLDKIG 720
  721 LKGYELGKTK VFLRAGQMAE LDARRAEVLG NAARRIQRQS RTFIACKEFR ALRGAAIVLQ 780
  781 SNCRGKLACN LYEEMRRQAA AVKIQKIFRR HIARESYLRI RHSTITVQTA LRGMVARNEF 840
  841 RFRKQMKAAT IIQARLRSHL THSYYKQLQK AALSTQCGWR SRVARKELRT LKMAARDTGA 900
  901 LREAKDKLEK RVEELTWRLQ LEKRQRTELE EAKTQEYAKQ QEALETMRLQ VEEANAAVIR 960
  961 EREAARKAIE EAPPVIKETP VLVEDTEKIN SLTSEVEALK ASLQAERQAA ENLRKAFSEA1020
 1021 EARNSELATE LENATRKADQ LHESVQRLEE KLSNSESEIQ VLRQQALAIS PTSRTMATRS1080
 1081 KTMLLPRTPE NGNYLNGGTK TTPDMTLAVR EPESEEKPQK HLNEKQQENQ DLLVKCISQN1140
 1141 LGYNGDKPVA ACVIYKCLLH WRSFEVERTS VFDRIIQTIA TAIEVPDNNE VLAYWLSNSA1200
 1201 TLLLLLQRTL KATGAASLTP QRRRTTSASL FGRMSQGLRG SPQSAGLSFL NRQGLTKLDD1260
 1261 LRQVEAKYPA LLFKQQLTAF LEKIYGMIRD NLKKEISPLL GLCIQAPRTS RASLVKGRAQ1320
 1321 ANAVAQQALI AHWQSIRKSL NSYLNLMKAN NAPPFLVRKV FTQIFSFINV QLFNSLLLRR1380
 1381 ECCSFSNGEY VKAGLAELEQ WCIEATDEYA GSAWDELRHI RQAVGFLVIH QKPKKTLDEI1440
 1441 TRELCPVLSI QQLYRISTMY WDDKYGTHSV SSDVIANMRV MMTEDSNNAV SSSFLLDDDS1500
 1501 SIPFTVEDIS KSMQQVDVND IEPPQLIREN SGFGFLLTRK EGSTS

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