YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ANTR6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	129	0.80
Transmembrane Helix	130	150	0.83
Non-Cytoplasmic	151	170	0.44
Transmembrane Helix	171	200	0.76
Cytoplasmic	201	225	0.64
Transmembrane Helix	226	249	0.90
Non-Cytoplasmic	250	255	0.89
Transmembrane Helix	256	275	0.94
Cytoplasmic	276	315	0.94
Transmembrane Helix	316	335	0.85
Non-Cytoplasmic	336	354	0.80
Transmembrane Helix	355	377	0.83
Cytoplasmic	378	392	0.79
Transmembrane Helix	393	413	0.89
Non-Cytoplasmic	414	419	0.78
Transmembrane Helix	420	441	0.93
Cytoplasmic	442	451	0.84
Transmembrane Helix	452	475	0.91
Non-Cytoplasmic	476	482	0.84
Transmembrane Helix	483	505	0.91
Cytoplasmic	506	517	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARLTLRPHN HFFSSPIYAH KQPFLSVYTI FPHHHQNPLI KSRVKCSASG TERVRESKKL  60
   61 PPKDPIEDPK PQLPIPEVLS TETGFEQNWP PWKNIPQRYK LIGATSLAFV ICNMDKVNLS 120
  121 IAIIPMSHQF GWSSSVAGLV QSSFFWGYAL SQLPGGWLSK IFGGRKVLEI GVFTWSFATA 180
  181 LVPLLAGFMP GLIFSRILVG IGEGVSPSAA TDLIARTIPV KERSRAVGFV FGGLSLGSVM 240
  241 GLLLAPPIIE TFNWESVFYL FGLLGVGWFV GFQFLNEEEV SYKGNEISTS HKSENATKEE 300
  301 LGSSLKEIPW KSFFQSPAVW AMIYTHFCGS WGHYTCLSWL PTYFSEALSL NLTEAAWVSI 360
  361 LPPLASIVVT SLASQFADYL ITNGVDTTTV RKICQTIAFV APAICMTLSS VDIGLPPWEI 420
  421 VGILTAGLAL SSFALSGLYC THQDISPEYA SILLGITNTV GAVPGIVGVA LTGFLLDSTH 480
  481 SWTMSLFVPS IFFYLTGTVV WLAFASSEPQ TFRKEDS