YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BASS5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.98
Transmembrane Helix	98	118	0.89
Non-Cytoplasmic	119	126	0.71
Transmembrane Helix	127	144	0.87
Cytoplasmic	145	161	0.78
Transmembrane Helix	162	184	0.79
Non-Cytoplasmic	185	189	0.59
Transmembrane Helix	190	211	0.78
Cytoplasmic	212	218	0.71
Transmembrane Helix	219	244	0.84
Non-Cytoplasmic	245	251	0.79
Transmembrane Helix	252	274	0.89
Cytoplasmic	275	286	0.69
Transmembrane Helix	287	306	0.92
Non-Cytoplasmic	307	316	0.68
Transmembrane Helix	317	342	0.85
Cytoplasmic	343	353	0.82
Transmembrane Helix	354	375	0.78
Non-Cytoplasmic	376	380	0.83
Transmembrane Helix	381	402	0.92
Cytoplasmic	403	407	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVISPTETL FLKSQHRLLQ PRNYSYALAF HSTRRVANFP RNSFSSLGSC SVDFPLRSNP  60
   61 ISQNSKSIHP WRRYVSESDS NELYHKKVSS IMETLKQAYS FIPHGILLST ILALVYPPSF 120
  121 TWFKPRYFVP GLGFMMFAVG INSNERDFLE ALKRPDAIFA GYIGQYLIKP LLGYIFGVIA 180
  181 VSLFNLPTSI GAGIMLVSCV SGAQLSNYTT FLTDPSLAAL SIVMTSISTA TAVLVTPMLS 240
  241 LLLIGKKLPV DVFGMISSIL QVVITPIAAG LLLNRLFPRL SNAIKPFLPA LTVIDMSCCI 300
  301 GAPLALNIDS ILSPFGATIL FLVITFHLLA FVAGYFFTGF FFSKAPDVKA LQRTISYETG 360
  361 MQSSLLALAL ATKFFQDPLV GVPPAISTVV MSLMGVSLVT IWKNRKE