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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y4372_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.77
Topology Confidence: 0.64
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMELISVIF FFFCSVLSSS ALNSDGLVLM KFKSSVLVDP LSLLQTWNYK HESPCSWRGI  60
   61 SCNNDSKVLT LSLPNSQLLG SIPSDLGSLL TLQSLDLSNN SFNGPLPVSF FNARELRFLD 120
  121 LSSNMISGEI PSAIGDLHNL LTLNLSDNAL AGKLPTNLAS LRNLTVVSLE NNYFSGEIPG 180
  181 GWRVVEFLDL SSNLINGSLP PDFGGYSLQY LNVSFNQISG EIPPEIGVNF PRNVTVDLSF 240
  241 NNLTGPIPDS PVFLNQESNF FSGNPGLCGE PTRNPCLIPS SPSIVSEADV PTSTPAIAAI 300
  301 PNTIGSNPVT DPNSQQTDPN PRTGLRPGVI IGIVVGDIAG IGILAVIFLY IYRCKKNKIV 360
  361 DNNNNDKQRT ETDTITLSTF SSSSSSPEES RRFRKWSCLR KDPETTPSEE EDEDDEDEES 420
  421 GYNANQRSGD NKLVTVDGEK EMEIETLLKA SAYILGATGS SIMYKAVLED GRVFAVRRLG 480
  481 ENGLSQRRFK DFEPHIRAIG KLVHPNLVRL CGFYWGTDEK LVIYDFVPNG SLVNPRYRKG 540
  541 GGSSSPYHLP WETRLKIAKG IARGLAYLHE KKHVHGNLKP SNILLGHDME PKIGDFGLER 600
  601 LLTGETSYIR AGGSSRIFSS KRYTTSSREF SSIGPTPSPS PSSVGAMSPY CAPESFRSLK 660
  661 PSPKWDVYGF GVILLELLTG KIVSVEEIVL GNGLTVEDGH RAVRMADVAI RGELDGKQEF 720
  721 LLDCFKLGYS CASPVPQKRP TMKESLAVLE RFHPNSSVIK SSSFHYGH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle