YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30690848, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKSPSKKN KPPSCGSLVT ILSLDGGGVR GIIAGELDGE EARLADYFDV IAGTSTGGLV  60
   61 TAMLTVPDET GRPHFAAKDI VPFYLEHCPK IFPQPTGVLA LLPKLPKLLS GPKYSGKYLR 120
  121 NLLSKLLGET RLHQTLTNIV IPTFDIKKLQ PTIFSSYQLL VDPSLDVKVS DICIGTSAAP 180
  181 TFFPPHYFSN EDSQGNKTEF NLVDGAVTAN NPTLVAMTAV SKQIVKNNPD MGKLKPLGFD 240
  241 RFLVISIGTG STKREEKYSA KKAAKWGIIS WLYDDGSTPI LDITMESSRD MIHYHSSVVF 300
  301 KALQSEDKYL RIDDDTLEGD VSTMDLATKS NLENLQKIGE KMLTNRVMQM NIDTGVYEPV 360
  361 AENITNDEQL KR

Type	Start	End	Confidence
Signal Peptide	1	31	0.77
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	372	0.99