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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y4312_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRDDKFPIV YSLLLIVLLF VSPIYGDGDA DALLKFKSSL VNASSLGGWD SGEPPCSGDK  60
   61 GSDSKWKGVM CSNGSVFALR LENMSLSGEL DVQALGSIRG LKSISFMRNH FEGKIPRGID 120
  121 GLVSLAHLYL AHNQFTGEID GDLFSGMKAL LKVHLEGNRF SGEIPESLGK LPKLTELNLE 180
  181 DNMFTGKIPA FKQKNLVTVN VANNQLEGRI PLTLGLMNIT FFSGNKGLCG APLLPCRYTR 240
  241 PPFFTVFLLA LTILAVVVLI TVFLSVCILS RRQGKGQDQI QNHGVGHFHG QVYGQPEQQQ 300
  301 HSEKSSQDSK VYRKLANETV QRDSTATSGA ISVGGLSPDE DKRGDQRKLH FVRNDQERFT 360
  361 LQDMLRASAE VLGSGGFGSS YKAALSSGRA VVVKRFRFMS NIGREEFYDH MKKIGRLSHP 420
  421 NLLPLIAFYY RKEEKLLVTN YISNGSLANL LHANRTPGQV VLDWPIRLKI VRGVTRGLAY 480
  481 LYRVFPDLNL PHGHLKSSNV LLDPNFEPLL TDYALVPVVN RDQSQQFMVA YKAPEFTQQD 540
  541 RTSRRSDVWS LGILILEILT GKFPANYLRQ GKGADDELAA WVESVARTEW TADVFDKEMK 600
  601 AGKEHEAQML KLLKIGLRCC DWDIEKRIEL HEAVDRIEEV DRDAGGGQES VRSSYVTASD 660
  661 GDHRSSRAMT EEFSLM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle