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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SSY4_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKLSSFCF LTHGLAGISC EREHGSSRRF FYLPSRRLVS TSCKMRQQRG FDSSKRQEVK  60
   61 KGSPKPILSI NSGLQSNNDE ESDLENGSAD SVPSLKSDAE KGSSIHGSID MNHADENLEK 120
  121 KDDIQTTEVT RRKSKTAKKK GESIHATIDI GHDDGKNLDN ITVPEVAKAL SLNKSEGEQI 180
  181 SDGQFGELMT MIRSAEKNIL RLDEARATAL DDLNKILSDK EALQGEINVL EMKLSETDER 240
  241 IKTAAQEKAH VELLEEQLEK LRHEMISPIE SDGYVLALSK ELETLKLENL SLRNDIEMLK 300
  301 SELDSVKDTG ERVVVLEKEC SGLESSVKDL ESKLSVSQED VSQLSTLKIE CTDLWAKVET 360
  361 LQLLLDRATK QAEQAVIVLQ QNQDLRNKVD KIEESLKEAN VYKESSEKIQ QYNELMQHKV 420
  421 TLLEERLEKS DAEIFSYVQL YQESIKEFQE TLESLKEESK KKSRDEPVDD MPWDYWSRLL 480
  481 LTVDGWLLEK KIASNDADLL RDMVWKKDRR IHDTYIDVKD KNERDAISAF LKLVSSPTSS 540
  541 GLYVVHIAAE MAPVAKVGGL GDVVAGLGKA LQRKGHLVEI ILPKYDCMQY DRVRDLRALD 600
  601 TVVESYFDGK LYKNKIWIGT VEGLPVHFIE PQHPSKFFWR GQFYGEQDDF RRFSYFSRAA 660
  661 LELLLQSGKK PDIIHCHDWQ TAFVAPLYWD LYAPKGLDSA RICFTCHNFE YQGTASASEL 720
  721 GSCGLDVNQL NRPDRMQDHS SGDRVNPVKG AIIFSNIVTT VSPTYAQEVR TAEGGKGLHS 780
  781 TLNFHSKKFI GILNGIDTDS WNPATDPFLK AQFNAKDLQG KEENKHALRK QLGLSSAESR 840
  841 RPLVGCITRL VPQKGVHLIR HAIYRTLELG GQFVLLGSSP VPHIQREFEG IEQQFKSHDH 900
  901 VRLLLKYDEA LSHTIYAASD LFIIPSIFEP CGLTQMIAMR YGSIPIARKT GGLNDSVFDI 960
  961 DDDTIPTQFQ NGFTFQTADE QGFNYALERA FNHYKKDEEK WMRLVEKVMS IDFSWGSSAT1020
 1021 QYEELYTRSV SRARAVPNRT 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle