YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91806403, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	138	0.89
Transmembrane Helix	139	158	0.79
Non-Cytoplasmic	159	162	0.81
Transmembrane Helix	163	184	0.92
Cytoplasmic	185	206	0.83
Transmembrane Helix	207	231	0.79
Non-Cytoplasmic	232	251	0.82
Transmembrane Helix	252	272	0.84
Cytoplasmic	273	277	0.86
Transmembrane Helix	278	300	0.91
Non-Cytoplasmic	301	318	0.85
Transmembrane Helix	319	340	0.89
Cytoplasmic	341	350	0.87
Transmembrane Helix	351	375	0.91
Non-Cytoplasmic	376	395	0.94
Transmembrane Helix	396	418	0.89
Cytoplasmic	419	436	0.83
Transmembrane Helix	437	458	0.90
Non-Cytoplasmic	459	463	0.67
Transmembrane Helix	464	485	0.91
Cytoplasmic	486	493	0.92
Transmembrane Helix	494	516	0.94
Non-Cytoplasmic	517	524	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELEEQERDI LFPTDDEECQ VDVSCDDEDD DSSSYSSLSQ NDSAPWPRSY RQSVDILTGV  60
   61 TPPTISFIHR RSSQTSFTSS VASLYKRRPT SIANSFASST SKQPLLSEKD DVLFLSSQIG 120
  121 LSNTDLSYGE PNFCSFPQSV LNGINVLCGI SLLTMPYAVK EGGWLGLCIL LSFAIITCYT 180
  181 GILLKRCLES SSDLRTYPDI GQAAFGFTGR LIISILLYME LYVCCVEYII MMSDNLSRVF 240
  241 PNITLNIVGV SLDSPQIFAI SATLIVLPTV WLKDLSLLSY LSAGGVFVSI LLALCLFWVG 300
  301 SVDGVGFHTG GKSLDLANLP VAIGIFGFGF SGHAVLPSIY SSMKEPSKFP LVLLISFGFC 360
  361 VFFYIVVAIC GYSMFGEAIQ SQFTLNMPQQ YTASKIAVWT AVVVPMTKYA LALTPIVLGL 420
  421 EELMLPSEKM RSYGVSIFIK TILVLSTLVV ALTFPFFAIM GALMGSFLAM LVDFIFPCLC 480
  481 YLSILKGRLS KTQIGICVFI IISGIVSGCC GTYSAIGRLV GKLD