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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AMPN_RABIT
Protein type: Globular with Signal Peptide
Type Confidence: 0.70
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGFYISKS LGILGILLGV AALCTIVALS VVYRQEKNKN TSQSPSMAPL NPTATSSPAT  60
   61 TLDQNLPWNR YRLPKTLIPD SYNVVLRPYL SPNSQGLYIF TGSSTVRFTC QEATNVIIIH 120
  121 SKKLNYTITQ GHRVVLRGVR GSQPPAIAST ELVELTEYLV VHLQGQLVAG SQYEMDTQFQ 180
  181 GELADDLAGF YRSEYMEGNV RKVVATTQMQ AADARKSFPC FDEPAMKATF NITPIHPRDY 240
  241 TALSNMLPRS STALPEDPNW TVTEFHTTPK MSTYLLAYIV SEFTNIEAQS PNNVQIRIWA 300
  301 RPSAISEGHG QYALNVTGPI LNFFANHYNT PYPLEKSDQI GLPDFNAGAM ENWGLVTYRE 360
  361 SALLFDPLVS SISNKERVVT VVAHELAHQW FGNLVTVDWW NDLWLNEGFA SYVEYLGADY 420
  421 AEPTWNLKDL IVLNELHSVM AVDALASSHP LSSPADEVNT PAQISELFDS ITYSKGASVL 480
  481 RMLSSFLTED LFKEGLASYL HTFAYQNTIY LDLWEHLQQA VNSQSAIQLP ASVRDIMDRW 540
  541 ILQMGFPVVT VNTTNGIISQ HHFLLDPTSN VTRPSDFNYL WIVPVSSMRN GVLEQEFWLE 600
  601 GVEQTQNSLF RVEGDNNWIL ANLNVTGYYQ VNYDEGNWKK LQTQLQTNPS VIPVINRAQI 660
  661 IHDAFNLASA QKVPVTLALD NTLFLIRETE YMPWQAALSS LNYFKLMFDR SEVYGPMKNY 720
  721 LSKQVRPLFE HFKNITNDWT RRPDTLMDQY NEINAISTAC SNGIQECETL VSDLFKQWMD 780
  781 DPSNNPIHPN LRTTVYCNAI ALGGEREWDF AWEQFRNATL VNEADKLRSA LACSNEVWIL 840
  841 NRYLSYTLNP DYIRRQDATS TINSIASNVI GQTLVWDFVQ SNWKKLFEDF GGGSFSFANL 900
  901 IRAVTRRFST EYELQQLEQF RLNNLDTGFG SGTRALEQAL EQTRANIKWV QENKEAVLAW 960
  961 FTANSA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle