YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|133778902, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.98
Transmembrane Helix	34	58	0.86
Non-Cytoplasmic	59	73	0.92
Transmembrane Helix	74	96	0.90
Cytoplasmic	97	106	0.82
Transmembrane Helix	107	125	0.94
Non-Cytoplasmic	126	131	0.67
Transmembrane Helix	132	153	0.89
Cytoplasmic	154	168	0.74
Transmembrane Helix	169	188	0.87
Non-Cytoplasmic	189	208	0.92
Transmembrane Helix	209	230	0.95
Cytoplasmic	231	275	0.96
Transmembrane Helix	276	294	0.93
Non-Cytoplasmic	295	317	0.89
Transmembrane Helix	318	337	0.93
Cytoplasmic	338	346	0.84
Transmembrane Helix	347	368	0.91
Non-Cytoplasmic	369	381	0.63
Transmembrane Helix	382	401	0.88
Cytoplasmic	402	414	0.76
Transmembrane Helix	415	439	0.75
Non-Cytoplasmic	440	453	0.85
Transmembrane Helix	454	474	0.93
Cytoplasmic	475	478	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDESRTIL LEKNEDCPGC IIDRTKQQQR GVPYLHLSFI WLVSLCTALP ISSLFPYIYF  60
   61 MIRDFHIAKQ EEDIGFYAGF VGSSFMIGRA LTSIFWGKLA DRYGRKPIIL IGTFSVIIFN 120
  121 TLFGLSTSFW LAISVRFLLG CFNCLLGVIR AYASEVVSEE YNALSLSVVS TSRGIGLILG 180
  181 PAIGGYLAQP AEKYPNIFSQ SSVFGRFPYF LPSLVISVYA TAVLIACWWL PETLHTRCRI 240
  241 AQGRLNPTEL NDDESRGGGL DEQKIINKPS LLRNRPLMAI IIVYCVFSLQ EIAYNEIFSL 300
  301 WAVSDRSYGG LSFSSQDVGE VLAISGLGLL VFQLLVYPPL EKSVGLLAVI RLSAVLLIPL 360
  361 LSCYPYIALL SGVTLHLVIN CASIIKNALS ISLVTGLFIM LNKAVPQNQR GAANGISMTA 420
  421 MSVFKSFGPA GGGVLFSWAQ KRQDATFLPG DEMVFLVLNL VQLVGLILTF IPYISQIQ