YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EDL13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	48	0.98
Transmembrane Helix	49	71	0.88
Non-Cytoplasmic	72	88	0.81
Transmembrane Helix	89	109	0.89
Cytoplasmic	110	120	0.73
Transmembrane Helix	121	142	0.88
Non-Cytoplasmic	143	147	0.83
Transmembrane Helix	148	169	0.91
Cytoplasmic	170	179	0.80
Transmembrane Helix	180	199	0.95
Non-Cytoplasmic	200	206	0.76
Transmembrane Helix	207	226	0.95
Cytoplasmic	227	287	0.97
Transmembrane Helix	288	311	0.85
Non-Cytoplasmic	312	323	0.88
Transmembrane Helix	324	344	0.93
Cytoplasmic	345	351	0.88
Transmembrane Helix	352	373	0.93
Non-Cytoplasmic	374	384	0.80
Transmembrane Helix	385	409	0.87
Cytoplasmic	410	417	0.82
Transmembrane Helix	418	439	0.82
Non-Cytoplasmic	440	449	0.67
Transmembrane Helix	450	468	0.93
Cytoplasmic	469	488	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDEPLLQKV KIQEDIESVP LLQKVKIQED IESVKGIRVN NDGEEDGPVT LILLFTTFTA  60
   61 LCGTFSYGTA AGFTSPAQTG IMAGLNLSLA EFSFFGAVLT IGGLVGAAMS GKLADVFGRR 120
  121 GALGVSNSFC MAGWLMIAFS QATWSLDIGR LFLGVAAGVA SYVVPVYIVE IAPKKVRGTF 180
  181 SAINSLVMCA SVAVTYLLGS VISWQKLALI STVPCVFEFV GLFFIPESPR WLSRNGRVKE 240
  241 SEVSLQRLRG NNTDITKEAA EIKKYMDNLQ EFKEDGFFDL FNPRYSRVVT VGIGLLVLQQ 300
  301 LGGLSGYTFY LSSIFKKSGF PNNVGVMMAS VVQSVTSVLG IVIVDKYGRR SLLTVATIMM 360
  361 CLGSLITGLS FLFQSYGLLE HYTPISTFMG VLVFLTSITI GIGGIPWVMI SEMTPINIKG 420
  421 SAGTLCNLTS WSSNWFVSYT FNFLFQWSSS GVFFIYTMIS GVGILFVMKM VPETRGRSLE 480
  481 EIQAAITR