YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y3330_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.49
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIGDDDEL RSKTVSLPRR ISFTILLLLL LISLSTRVSG SLDKSGRRVI EARTGQDLIW  60
   61 VVQLSDLHFS VHHPERAIDF KNIVGPALAL INPSLVLITG DLTDGKSKDM LTMKLNEDEW 120
  121 LEYESVMQDV VKRSGLNKSI FYDLRGNHDN FGVPSVGSSV DFFSKYSING QMGRKGNVNT 180
  181 ITVETSERKH LFVGIDTTMH IGLRGPTNLF GHPTDELLSS LDSHLSQWDN QSAKPVAKIS 240
  241 FGHFPLSFTA LSHSQKSLKD VFLKHSISAY LCGHLHSRFG KNLKRHHHSG GISLSDNDLF 300
  301 QLNMRQSGAE STSNCSFGAL PAAEFWEWEM GDWRKNRAMR IMAIDRGHVS YVDLDFKSKP 360
  361 QKTIILPTFP LDSRFMSTSF ARHKYECQHM ISSSYDAIRA IVFSHSLVVE VVARVYDSSP 420
  421 GFDNLVMEAP MRKHGGDSSS SGATFFSLPW NYRAFEDPLP DRFWLQIEVT DIKGRLTLSE 480
  481 MRPFSINGLS SKVSWTWNEF RVMGCQWAAL YYPILWPALY SLFLVFLIPK CIIIVFKKQY 540
  541 TLKKFIAKKG PITLVLWILQ DLCRMPVVWF GYMAYLFYLI FFPWFSGEVF ADSGDRAYMT 600
  601 IMGWVVTSSG ADRKHEYIGQ PDVMVVVIPH VVFVVIPSVL VVCCLVAERE IYKDHIRTVS 660
  661 GKKEDDHDRG RKKRSQRRSL LFSNRRLFRK SVLLASLALY WKHFKNCWAL GRAYEMNVVH 720
  721 FPGYSLVVPL LLLYVICKTH KVP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle