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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCASE_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSLPLFQF ILFLLLLLLS RTVYAYLIGV GSYDITGPAA DVNMMGYANS DQIASGIHFR  60
   61 LRARAFIVAE PQGNRVVFVN LDACMASQIV TIKVLERLKA RYGELYTEKN VAISGIHTHA 120
  121 GPGGYLQYVT YIVTSLGFVR QSFDVVVNGI EQSIVQAHES LRPGSAFVNK GDLLDAGVNR 180
  181 SPSSYLNNPA AERSKYKYDV DKEMTLVKFV DSQLGPTGSF NWFATHGTSM SRTNSLISGD 240
  241 NKGAAARFME DWFENGQKNS VSSRNIPRRV STIVSDFSRN RDRLLDIAAT YKSSRGHSVD 300
  301 KSLDVKTRVR NGSKRKFVSA FCQSNCGDVS PNTLGTFCID TGLPCDFNHS TCNGQNELCY 360
  361 GRGPGYPDEF ESTRIIGEKQ FKMAVELFNK ATEKLQGKIG YQHAYLDFSN LDVTVPKAGG 420
  421 GSETVKTCPA AMGFGFAAGT TDGPGAFDFK QGDDQGNVFW RLVRNVLRTP GPEQVQCQKP 480
  481 KPILLDTGEM KEPYDWAPSI LPIQILRIGQ LVILSVPGEF TTMAGRRLRD AIKSFLISSD 540
  541 PKEFSNNMHV VIAGLTNTYS QYIATFEEYE VQRYEGASTL YGRHTLTAYI QEFKKLATAL 600
  601 VNGLTLPRGP QPPDLLDKQI SLLSPVVVDS TPLGVKFGDV KADVPPKSTF RRGQQVNATF 660
  661 WSGCPRNDLM TEGSFAVVET LREGGKWAPV YDDDDFSLKF KWSRPAKLSS ESQATIEWRV 720
  721 PESAVAGVYR IRHYGASKSL FGSISSFSGS SSAFVVV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle