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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2832778
Protein type: Globular with Signal Peptide
Type Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPRCLLVGH SAPVLCLVRA SLLPENNFLV SSSENGEMCT WDLTDGKCME AVKLPQVHTQ  60
   61 IQSYHTANSE DVRLFCIGYY AEIMVMDPFS LEVIYVLSSK VKPDWISAIH VLRPMRRKDD 120
  121 VVLAITTTGT VKVWTLTGNE NKHAEPIYEN ESKEIRCLNA ITMNCCAQNQ RTVLLVCTKY 180
  181 WQIYDAGDFT VLCSVIAPAR ERWQGGDFIT SDRVMLWTDE GKGYLYKLPA NCIPDNKEFH 240
  241 SKSVVRDAPY LYYVLQHAGD KVLSCPPAMK LLQGAGGQHN LLRGDSEGYI SVWNVPEVPL 300
  301 DNISILQAKQ MPPRPLKPHV CTSLVEAWSI MDPPPVGILD QLSRITESPV KLTSSIYLPQ 360
  361 QSRLVIGRED GSIVIVPATQ TVMMQLLVGI KQNFSDWPSH QILYGHRGRV NCLLCPSMIH 420
  421 SRYEKSHLLS GGIDFAVCLW DLYSGSLLHR FCVHAGEITQ LLVPPESCSP RILKCICSVA 480
  481 SDHSVTLVSL QERKCVTLAS RHLFPVVTIK WAPLDDFLIV GCSDGSVYVW QMETGHLDRV 540
  541 LHGMLAEEVL SACDEQAEDG GSGGGGGSNG ASASEMGMAN PAVHFFRGLK SRNMNAIRHA 600
  601 TQRGITQLQQ LQGHNQGNFD FLMKHRSNPL VIQGLRTNPK DAESHILFFD IEGLIFELHS 660
  661 EEYAQMTPAT LESLGVHLQN PKDGKSMHLD ASKKIGDFFN KVKNKAVDVE KILKDKDKHG 720
  721 LVQKFKEKTE IVEKKVQAKV ESLQKAVEPH EEQQDLKSKI ASKMEVTHVM EVAQLLLSLL 780
  781 HSWGLDPHLD KMCETRLGLL RPIVPISYGV LSKAGYMSLL LPTWQNNYAI PPGIQLPSSS 840
  841 KKRPLPEELQ RLEHLTAVFT SRLHWELSTT LTTNHILALV AMSNTLLSMS AASFLPDSEK 900
  901 HKKLQRLAQR TDSTLSNEEE REELMAHHIS QIKHAWSLLA THHCFLLPDK IEALEPKKFK 960
  961 RPQVEMMVKR WQHHCIEIRE AAQQILLGEL TRMGKKGRKQ LVESWAQYLP LYTHTEPIVG1020
 1021 AQQQLALISQ PASGGAGSGS GGNGGVGVGV SGGGGAGSGS GPGGSVPGGD AHQDEDYEEE1080
 1081 EEEIIRKPSS LSELKRKQTT AVILLGVIGA EFGQDISQES PNHRGSISMA TGANLTSGVA1140
 1141 GGERRKSSVV EGFGIANNLA RLTSMALAHL LYAPPSPKLP QYTPLRRAAI DLLGRGFTVW1200
 1201 EPYLDVSKVL LGLLEISCEG KAVPNLNYKL PLTPQADACR TARHALRLIA TARPAAFITT1260
 1261 MAREVARYNT MQQNAQSINT PLTQSVLHKA KGEILQCVEM LIDKMQSEIA GLLVEVMDIA1320
 1321 LHCVDGNELK NRGLAELCPA ICKFNQISHC AQTRRIAVGA NSGNLAIYEL RQNKCQMIPA1380
 1381 HTHPITSLAF SPDGKYLVSY SCAENRLSFW QTSTGMFGLG QSQTRCTKGY STAPIPDVSR1440
 1441 LNPMRLAKLV WINNRTVTLM LADGSETRFN V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle