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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PPA13_ARATH
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVKYTMSMS FFVIFASTVT IIVHGFPSTL DGPLNPVTAP LDPNLNPIAF DLPESDPSFV  60
   61 KPISEFLLPE QISVSLSYSF DSVWISWVTG EYQIGEKDSA PLDPNCVQSI VQYREFDVRR 120
  121 TRKQNATGHS IVYNQQYSSE NGFMNYTSGI IHHVQLTGLK PNTLYRYQCG DPSLSAMSKE 180
  181 YYFRTMPKST SENYPHRIVV AGDLGLTYNT STVLGHILSN HPDLVVLLGG FSYADTYLAN 240
  241 KTKLDCSSCH CDQNGTSSDC GSCYSSGETY QPRWDYWGRF MEPLTANVPT MMVAGEHEIE 300
  301 PQTENNLTFA AYSSRFAFPS NESGSFSPLY YSFNAGGAHF IVLNSYTLYD NSSDQYIWLE 360
  361 SDLIKINRSE TPWVVATWSL PWYSTFKGHY REAESMRIHL EDLLYNYRVD IVFNSHVDAY 420
  421 ERSNRVYNYT LDQCGPVYIT TGAGGAGKLE TQHVDDPGNI PDPSQNYSCR SSGLNSTLEP 480
  481 VKDETCPVKQ PEYSAYRESS FGFGILEVKN ETHALWSWNR NQDLYYLAAD VIHIVRQPEM 540
  541 CSVCN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle