YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RBL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP  60
   61 AIVVANIALF AISMFINNCP KNSAYCLARF LGRFAFQPMK ENPLLGPSSL TLEKMGALDV 120
  121 SMVVHKHEVW RLFTCIWLHA GVFHVLANML SLIFIGIRLE QEFGFVRIGL LYMISGFGGS 180
  181 LLSSLFNRAG ISVGASGALF GLLGAMLSEL LTNWTIYANK FAALLTLIFI IAINLAVGIL 240
  241 PHVDNFAHLG GFTSGFLLGF VFLIRPQYGY FNQRNNPRGY AAPSAKSKHK PYQYVLWITS 300
  301 LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS CKSQNVYCES SQIGQQMNLT 360
  361 CITNGKTEMY KLSNDIPSRI QQLCSQLCR

Type	Start	End	Confidence
Cytoplasmic	1	52	0.95
Transmembrane Helix	53	75	0.91
Non-Cytoplasmic	76	134	0.93
Transmembrane Helix	135	156	0.91
Cytoplasmic	157	162	0.86
Transmembrane Helix	163	185	0.87
Non-Cytoplasmic	186	190	0.70
Transmembrane Helix	191	212	0.88
Cytoplasmic	213	220	0.72
Transmembrane Helix	221	240	0.94
Non-Cytoplasmic	241	246	0.73
Transmembrane Helix	247	268	0.87
Cytoplasmic	269	293	0.88
Transmembrane Helix	294	316	0.88
Non-Cytoplasmic	317	389	0.90