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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y2239_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVMKLITMK IFSVLLLLCF FVTCSLSSEP RNPEVEALIN IKNELHDPHG VFKNWDEFSV  60
   61 DPCSWTMISC SSDNLVIGLG APSQSLSGTL SGSIGNLTNL RQVSLQNNNI SGKIPPEICS 120
  121 LPKLQTLDLS NNRFSGEIPG SVNQLSNLQY LRLNNNSLSG PFPASLSQIP HLSFLDLSYN 180
  181 NLRGPVPKFP ARTFNVAGNP LICKNSLPEI CSGSISASPL SVSLRSSSGR RTNILAVALG 240
  241 VSLGFAVSVI LSLGFIWYRK KQRRLTMLRI SDKQEEGLLG LGNLRSFTFR ELHVATDGFS 300
  301 SKSILGAGGF GNVYRGKFGD GTVVAVKRLK DVNGTSGNSQ FRTELEMISL AVHRNLLRLI 360
  361 GYCASSSERL LVYPYMSNGS VASRLKAKPA LDWNTRKKIA IGAARGLFYL HEQCDPKIIH 420
  421 RDVKAANILL DEYFEAVVGD FGLAKLLNHE DSHVTTAVRG TVGHIAPEYL STGQSSEKTD 480
  481 VFGFGILLLE LITGMRALEF GKSVSQKGAM LEWVRKLHKE MKVEELVDRE LGTTYDRIEV 540
  541 GEMLQVALLC TQFLPAHRPK MSEVVQMLEG DGLAERWAAS HDHSHFYHAN MSYRTITSTD 600
  601 GNNQTKHLFG SSGFEDEDDN QALDSFAMEL SGPR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle