YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLT4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.98
Transmembrane Helix	54	75	0.86
Non-Cytoplasmic	76	93	0.79
Transmembrane Helix	94	113	0.91
Cytoplasmic	114	122	0.84
Transmembrane Helix	123	142	0.95
Non-Cytoplasmic	143	149	0.71
Transmembrane Helix	150	171	0.91
Cytoplasmic	172	180	0.81
Transmembrane Helix	181	202	0.85
Non-Cytoplasmic	203	212	0.73
Transmembrane Helix	213	234	0.93
Cytoplasmic	235	295	0.98
Transmembrane Helix	296	316	0.71
Non-Cytoplasmic	317	337	0.72
Transmembrane Helix	338	360	0.83
Cytoplasmic	361	367	0.85
Transmembrane Helix	368	390	0.93
Non-Cytoplasmic	391	398	0.70
Transmembrane Helix	399	422	0.92
Cytoplasmic	423	434	0.81
Transmembrane Helix	435	457	0.74
Non-Cytoplasmic	458	462	0.56
Transmembrane Helix	463	485	0.89
Cytoplasmic	486	526	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKNLPEVGN GGGSGFPAVS VGNKKNKYQR MDSDAEESQN HREAEARNSR TRKYVMACAF  60
   61 FASLNNVLLG YDVGVMSGAV LFIQQDLKIT EVQTEVLIGS LSIISLFGSL AGGRTSDSIG 120
  121 RKWTMALAAL VFQTGAAVMA VAPSFEVLMI GRTLAGIGIG LGVMIAPVYI AEISPTVARG 180
  181 FFTSFPEIFI NLGILLGYVS NYAFSGLSVH ISWRIMLAVG ILPSVFIGFA LCVIPESPRW 240
  241 LVMKGRVDSA REVLMKTNER DDEAEERLAE IQLAAAHTEG SEDRPVWREL LSPSPVVRKM 300
  301 LIVGFGIQCF QQITGIDATV YYSPEILKEA GIQDETKLLA ATVAVGVTKT VFILFATFLI 360
  361 DSVGRKPLLY VSTIGMTLCL FCLSFTLTFL GQGTLGITLA LLFVCGNVAF FSIGMGPVCW 420
  421 VLTSEIFPLR LRAQASALGA VGNRVCSGLV AMSFLSVSRA ITVGGTFFVF SLVSALSVIF 480
  481 VYVLVPETSG KSLEQIELMF QGGLERKDGE VELGDAERLV RKEQEF