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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: sdk-PF, sdk-PD, ...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKSAASSLR RRRPKTTITA TLAIEMPSQP KLASLLAVLV LLCYCDSCFF CYADANLQQQ  60
   61 NSIVQQQQLQ APRFTTHPSS SGSIVSEGST KILQCHALGY PQPTYRWLKD GVPVGDFSSS 120
  121 QFYRFHSTRR EDAGSYQCIA RNDAGSIFSE KSDVVVAYMG IFENTTEGRL TVISGHPAIF 180
  181 DMPPIESIPV PSVMWQSEDG PLNYDIKYAF THANQLIILS ADENDRKGYR AKAINTQLGK 240
  241 EESSAFVHLN VSGDPYIEVA PEIIVRPQDV KVKVGTGVVE LQCIANARPL HELETLWLKD 300
  301 GLAVETAGVR HTLNDPWNRT LALLQANSSH SGEYTCQVRL RSGGYPAVSA SARLQILEPP 360
  361 LFFTPMRAET FGEFGGQVQL TCDVVGEPTP QVKWFRNAES VDAHIESGRY TLNTDNTLVI 420
  421 KKLILDDAAM FQCLAINEAG ENSASTWLRV KTSAPIMELP PQNVTALDGK DATISCRAVG 480
  481 SPNPNITWIY NETQLVDISS RVQILESGDL LISNIRSVDA GLYICVRANE AGSVKGEAYL 540
  541 SVLVRTQIIQ PPVDTTVLLG LTATLQCKVS SDPSVPYNID WYREGQSSTP ISNSQRIGVQ 600
  601 ADGQLEIQAV RASDVGSYAC VVTSPGGNET RAARLSVIEL PFPPSNVKVE RLPEPQQRSI 660
  661 NVSWTPGFDG NSPISKFIIQ RREVSELEKF VGPVPDPLLN WITELSNVSA DQRWILLENL 720
  721 KAATVYQFRV SAVNRVGEGS PSEPSNVVEL PQEAPSGPPV GFVGSARSMS EIITQWQPPL 780
  781 EEHRNGQILG YILRYRLFGY NNVPWSYQNI TNEAQRNFLI QELITWKDYI VQIAAYNNMG 840
  841 VGVYTEGSKI KTKEGVPEAP PTNVKVEAIN STAARCRWTP PNPQQINGIN QGYKIQAWQR 900
  901 RLIDGEWRDI ERRMKTVPPS LIDPLAEQTA ILGGLEKFTE YNISVLCFTD PGDGVASSQV 960
  961 AVMTMDDVPD EVTGLHFDDV SDRSVKVLWA PPRASNGILT GYTVRYQVKD RPDTLKSFNL1020
 1021 TADDTELTVN QLQATTHYWF EIVAWTRVGS GIPKTATIQS GVEPVLPHAP TALALSNIEA1080
 1081 FSVVLQFTPG FDGNSSITKW KVEGQTARNM TWFTICEIND PDAETLTVTG LVPFTQYRLR1140
 1141 LSASNVVGSS KPSEATKDFQ TIQARPKHPP FNVTVRAMSA QQLRVRWIPL QQTEWYGNPR1200
 1201 GYNISYKQLV KTPGTIKYVP RSVVIEDHTA NSHVLDSLEE WTLYEVKMNA CNDVGCSKES1260
 1261 DTAVERTREA VPSYGPLDVQ ANATSSTTVV VQWGEVPRQH RNGQIDGYKV FYAAADRGQQ1320
 1321 VLHKTIPNNA TFTTTLTELK KYVVYHVQVL AYTRLGNGAL STPPIRVQTF EDTPGVPSNV1380
 1381 SFPDVSLTMA RIIWDVPVDP NGKILAYQVT YTLNGSAMLN YSREFPPSDR TFRATELLPG1440
 1441 KYYSFSCTAQ TRLGWGKIAT ALVYTTNNRE RPQAPSVPQI SRSQIQAHQI TFSWTPGRDG1500
 1501 FAPLRYYTVE MRENEGRWQP LPERVDPSLS SFTAVGLRPY MTYQFRIQAT NDLGPSAFSR1560
 1561 ESVIVRTLPA APAVGVGGLK VVPITTTSVR VQWSALETAL WNGDASTGGY RILYQQLSDF1620
 1621 PTALQSTPKT DVHGINENSV VLSDLQQDRN YEIVVLPFNS QGPGPATPPA AVYVGEAVPT1680
 1681 GEPRAVDAAP ISSTEVRLLW KPPKQSMQNG DILGYKIYYL VTYSPQALEP GRKWEEEIEV1740
 1741 VSATATSHSL VFLDKFTEYR IQLLAFNPAG DGPRSAPITV KTLPGVPSAP LHLRFSDITM1800
 1801 QSLEVTWDPP KFLNGEILGY LVTYETTEEN EKFSKQVKQK VSNTTLRVQN LEEEVTYTFT1860
 1861 VRAQTSVDYG PGISENVTTG PQDGSPVAPR DLILTKTLSS VEMHWINGPS GRGPILGYLI1920
 1921 EAKKRDDSRW TKIEQTRKGM MQDFTVSYHI LMPSTAYTFR VIAYNRYGIS FPVYSKDSIL1980
 1981 TPSKLHLEYG YLQHKPFYRQ TWFMVSLAAT SIVIIVMVIA VLCVKSKSYK YKQEAQKTLE2040
 2041 ESMAMSIDER QELALELYRS RHGVGTGTLN SVGTLRSGTL GTLGRKSTSR PPPGVHLGKS2100
 2101 PPRPSPASVA YHSDEESLKC YDENPDDSSV TEKPSEVSSS EASQHSESEN ESVRSDPHSF2160
 2161 VNHYANVNDS LRQSWKKTKP VRNYSSYTDS EPEGSAVMSL NGGQIIVNNM ARSRAPLPGF2220
 2221 SSFV

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