YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26245709
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.86
Transmembrane Helix	41	58	0.45
Non-Cytoplasmic	59	66	0.45
Transmembrane Helix	67	85	0.45
Cytoplasmic	86	103	0.60
Transmembrane Helix	104	126	0.66
Non-Cytoplasmic	127	135	0.50
Transmembrane Helix	136	153	0.49
Cytoplasmic	154	174	0.76
Transmembrane Helix	175	197	0.88
Non-Cytoplasmic	198	292	0.70
Transmembrane Helix	293	318	0.76
Cytoplasmic	319	383	0.56
Transmembrane Helix	384	405	0.85
Non-Cytoplasmic	406	455	0.41
Transmembrane Helix	456	481	0.64
Cytoplasmic	482	508	0.60
Transmembrane Helix	509	531	0.90
Non-Cytoplasmic	532	579	0.75
Transmembrane Helix	580	603	0.86
Cytoplasmic	604	894	0.83
Transmembrane Helix	895	919	0.82
Non-Cytoplasmic	920	933	0.76
Transmembrane Helix	934	953	0.82
Cytoplasmic	954	966	0.58
Transmembrane Helix	967	988	0.78
Non-Cytoplasmic	989	994	0.54
Transmembrane Helix	995	1013	0.55
Cytoplasmic	1014	1030	0.67
Transmembrane Helix	1031	1049	0.93
Non-Cytoplasmic	1050	1147	0.82
Transmembrane Helix	1148	1170	0.92
Cytoplasmic	1171	1222	0.96
Transmembrane Helix	1223	1245	0.91
Non-Cytoplasmic	1246	1253	0.81
Transmembrane Helix	1254	1276	0.89
Cytoplasmic	1277	1287	0.93
Transmembrane Helix	1288	1307	0.90
Non-Cytoplasmic	1308	1312	0.78
Transmembrane Helix	1313	1334	0.80
Cytoplasmic	1335	1347	0.74
Transmembrane Helix	1348	1370	0.87
Non-Cytoplasmic	1371	1381	0.74
Transmembrane Helix	1382	1399	0.67
Cytoplasmic	1400	1434	0.70
Transmembrane Helix	1435	1459	0.85
Non-Cytoplasmic	1460	1910	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGRKQSLKG GEPFLADYGP EESLNESADI EWVNKLWVRR LMRLCALVSL TSVSLNTPKT  60
   61 FERYPSLQFI TFASDTVLFT AEMIAKMHIR GVLHGEVPYL KDHWCQFDAS MVSFLWISII 120
  121 LQIFEVLEIV PKFSYLSIMR APRPLIMIRF LRVFLKFSMP KSRINQIFKR SSQQIYNVTL 180
  181 FFLFFMSLYG LLGVQFFGEL KNHCVMNNTE YDLYKRPILT INSLAIPDTF CSMDPDSGYQ 240
  241 CSPGMVCMKM DFLSSYVIGF NGFEDIATSI FTVYQAASQE GWVFIMYRAI DSLPAWRAAF 300
  301 YFSTMIFFLA WLVKNVFIAV ITETFNEIRV QFQQMWGARG HIQKTAASQI LSGNDTGWRL 360
  361 VTIDDNKHGG LAPETCHAIL RSPYFRMLVM SVILANGIVT ATMTFKHDGR PRDVFYERYY 420
  421 YIELVFTCLL DLETLFKIYC LGWRGYYKHS IHKFELLLAA GTTLHIVPMF YPSGLTYFQV 480
  481 LRVVRLIKAS PMLEGFVYKI FGPGKKLGSL IIFTMCLLII SSSISMQLFC FLCDFTKFES 540
  541 FPEAFMSMFQ ILTQEAWVEV MDETMIRTSK TLTPLVAVYF ILYHLFVTLI VLSLFVAVIL 600
  601 DNLELDEDIK KLKQLKFREQ SAEIKETLPF RLRIFEKFPD SPQMTILHRI PNDFMLPKVR 660
  661 ESFMKHFVIE LETEDSLVEN CKRPMSECWE SNVVFRKQKP VRIMNKTAKV RAAGSSLRKL 720
  721 AITHIINDSN NQRLMLGDSA MLPVVGTKGG GGLKSQGTIT HSKPWRVDQK KFGSRSIRRS 780
  781 VRSGSIKLKQ TYEHLMENGD IAAAPRANSG RARPHDLDIK LLQAKRQQAE MRRNQREEDL 840
  841 RENHPFFDTP LFLVPRESRF RKICQKIVHA RYDARLKDPL TGKERKVQYK SLHNFLGLVT 900
  901 YLDWVMIFAT TLSCISMMFE TPNYRVMDHP TLQIAEYGFV IFMSLELALK ILADGLFFTP 960
  961 KAYIKDVAAA LDVFIYVVST SFLCWMPLNI PTNSAAQLLM ILRCVRPLRI FTLVPHMRKV1020
 1021 VYELCRGFKE ILLVSTLLIL LMFIFASYGV QLYGGRLARC NDPTISRRED CVGVFMRRVF1080
 1081 VTKMKLTPGP DESYPAMLVP RVWANPRRFN FDNIGDAMLT LFEVLSFKGW LDVRDVLIKA1140
 1141 VGPVHAVYIH IYIFLGCMIG LTLFVGVVIA NYSENKGTAL LTVDQRRWCD LKKRLKIAQP1200
 1201 LHLPPRPDGR KIRAFTYDIT QHIIFKRVIA VVVLINSMLL SITWIKGEVH TERLVIVSAV1260
 1261 LTFVFVVEVV MKNIAFTPRG YWQSRRNRYD LLVTVAGVIW IILQTILRND LSYFFGFMVV1320
 1321 ILRFFTITGK HTTLKMLMLT VGVSVCKSFF IIFGMFLLVF FYALAGTILF GTVKYGEGIG1380
 1381 RRANFGSPVT GVAMLFRIVT GEDWNKIMHD CMVQPPYCTL GNNYWETDCG NFTASLIYFC1440
 1441 TFYVIITYIV LNLLVAIIME NFSLFYSNEE DALLSYADIR NFQNTWNIVD IHQRGVIPVR1500
 1501 RVKFILRLLK GRLECDPQKD RLLFKYMCYE LDKLHNGEDV TFHDVINMLS YRSVDIRKAL1560
 1561 QLEELLAREE FEYLVEEEVA KMTIRTWLEG CLKKIRAQNA SKQQNSLIAG LRATNEQPVM1620
 1621 RPNVQEDKAP LGAVDKSAIS TISGAVAGAC PPTSDAFSPT FSSTENEEKD GSSSAVVQLP1680
 1681 HSETSIAGTG SSATGAATAT GTSSGLGVGP PTVQSTARHV MTVGKRGYAL NRSDSTGSSA1740
 1741 GRKFLAPTSS DPQQRSTLSD KERLHITSQQ RKKNSMTTLP HAGQLGQLAK QRGGGGEATK1800
 1801 SSSFFAQLNS EIGQFHYPTI NAAAAAAALH GYGHGHGHGH GGHGGHGGHG EHQMHHHHGG1860
 1861 ALGSPSAMMS QMIGGSGKLL PFNNQANAVY EVHDWWQEQV LCPQTSDDEI