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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|2645007
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWFQVTIDM ILVLSFISSS TANPDAKRLY DDLLSNYNKL VRPVVNVTDA LTVRIKLKLS  60
   61 QLIDVNLKNQ IMTTNLWVEQ SWYDYKLKWE PKEYGGVEML HVPSDHIWRP DIVLYNNADG 120
  121 NFEVTLATKA TLNYTGRVEW RPPAIYKSSC EIDVEYFPFD EQTCVMKFGS WTYDGFQVDL 180
  181 RHIDELNGTN VVEVGVDLSE FYTSVEWDIL EVPAVRNEKF YTCCDEPYLD ITFNITMRRK 240
  241 TLFYTVNLII PCMGISFLTI LVFYLPSDSG EKVSLSISIL LSLTVFFLLL AEIIPPTSLV 300
  301 VPLLGKFVLF TMILDTFSIC VTVLVLNIHF RSPQTHTMAP WVRTVFINQL PRFLVMRRPL 360
  361 YPISEMIKSS RRLMVRTCNG LELRDQIPPL PPPVALSRMH HSPKTTSRST SPHLQHRVQT 420
  421 YNLMDECGMG MGGGASTITG HLSSLYPPTM STANQQTSTT SSLIDAQYHN QYQQTGGSLL 480
  481 DHPLTPTKFR QMTSTSSQTG QNGSGNGNGN GGYGGHGRSG GHHLYRQQSS CSANFSPLPQ 540
  541 HAHQAHASTT TSDLGMANPN VIKSTTTVNS VATASTLADS CCSGTIQIHQ GMGAGAACQS 600
  601 SELLHHQQLH HQQMHHQQQQ QQQQQHHHHQ RPTTSAAAAA AAAAAGGPST SAAAAAAAAA 660
  661 AAAGTPPPPP PPAGVCDILP ACQREGGPHC CSGRGNVRQR WHTCPELHKA MDGVTYIADQ 720
  721 TRKEEESTRV KEDWKYVAMV LDRLFLWIFT IAVVVGTAGI ILQAPTLYDT RMPIDIKLSE 780
  781 IASTTAKPNV ARPVL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle