YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|629605, gi\|515963
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRIFQFDET SLNSSSSDTY SRTASQSTTT INDYSLKSSS SDPYSRTASQ STNFSSGQAS  60
   61 GSQDAYASGQ ASGSQDAYAS GQASGTQHAY ASGIFEDHPG LNPTDERVVE LQCMIRENFE 120
  121 VLTCDPQRAL NLAEASHGES NNIPFLEYLL DDLTQNGVSG ESFREALDQV GQAAASPLDQ 180
  181 FEIVPLIPMN IGNFYFSFTN PSLFMLLTLS FFLLLIHFIT KKGGGNLVPN AWQSLVELLY 240
  241 DFVLNLVKEQ IGGLSGNVKQ MFFPCILVTF LFLLFCNLQG MIPYSFTVTS HFLITLALSF 300
  301 SIFIGITIVG FQRHGLHFFS FLLPAGVPLP LAPFLVLLEL ISYCFRALSL GIRLFANMMA 360
  361 GHSLVKILSG FAWTMLCMNE IFYFIGALGP LFIVLALTGL ELGVAILQAY VFTILICIYL 420
  421 NDAINLH

Type	Start	End	Confidence
Cytoplasmic	1	195	0.84
Transmembrane Helix	196	219	0.86
Non-Cytoplasmic	220	259	0.80
Transmembrane Helix	260	281	0.90
Cytoplasmic	282	289	0.66
Transmembrane Helix	290	311	0.92
Non-Cytoplasmic	312	320	0.66
Transmembrane Helix	321	345	0.76
Cytoplasmic	346	363	0.54
Transmembrane Helix	364	397	0.70
Non-Cytoplasmic	398	398	0.35
Transmembrane Helix	399	420	0.77
Cytoplasmic	421	427	0.65