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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1101789
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIPGDPTNMG DSHEDTSATM PEAVAEEVSL FSTTDMVLFS LIVGVLTYWF IFRKKKEEIP  60
   61 EFSKIQTTAP PVKESSFVEK MKKTGRNIIV FYGSQTGTAE EFANRLSKDA HRYGMRGMSA 120
  121 DPEEYDLADL SSLPEIDKSL VVFCMATYGE GDPTDNAQDF YDWLQETDVD LTGVKFAVFG 180
  181 LGNKTYEHFN AMGKYVDQRL EQLGAQRIFE LGLGDDDGNL EEDFITWREQ FWPAVCEFFG 240
  241 VEATGEESSI RQYELVVHED MDVAKVYTGE MGRLKSYENQ KPPFDAKNPF LAAVTANRKL 300
  301 NQGTERHLMH LELDISDSKI RYESGDHVAV YPANDSALVN QIGEILGADL DVIMSLNNLD 360
  361 EESNKKHPFP CPTTYRTALT YYLDITNPPR TNVLYELAQY ASEPSEQEHL HKMASSSGEG 420
  421 KELYLSWVVE ARRHILAILQ DYPSLRPPID HLCELLPRLQ ARYYSIASSS KVHPNSVHIC 480
  481 AVAVEYEAKS GRVNKGVATS WLRAKEPAGE NGGRALVPMF VRKSQFRLPF KSTTPVIMVG 540
  541 PGTGIAPFMG FIQERAWLRE QGKEVGETLL YYGCRRSDED YLYREELARF HKDGALTQLN 600
  601 VAFSREQAHK VYVQHLLKRD REHLWKLIHE GGAHIYVCGD ARNMAKDVQN TFYDIVAEFG 660
  661 PMEHTQAVDY VKKLMTKGRY SLDVWS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle