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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|9622882, gi|1...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGGDATNSG KHVAGQVCQI CGDGVGTAAD GDLFTACDVC GFPVCRPCYE YERKDGTQAC  60
   61 PQCKTKYKRH KGSPPVHGEE NEDVDADDVS DYNYQASGNQ DQKQKIAERM LTWRTNSRGS 120
  121 DIGLAKYDSG EIGHGKYDSG EIPRGYIPSL THSQISGEIP GASPDHMMSP VGNIGRRGHQ 180
  181 FPYVNHSPNP SREFSGSLGN VAWKERVDGW KMKDKGAIPM TNGTSIAPSE GRGVADIDAS 240
  241 TDYNMEDALL NDETRQPLSR KVPIPSSRIN PYRMVIVLRL AVLCIFLRYR ITHPVNNAYP 300
  301 LWLLSVICEI WFALSWILDQ FPKWSPINRE TYLDRLALRY DREGEPSQLA PVDIFVSTVD 360
  361 PMKEPPLVTA NTVLSILAVD YPVDKVSCYV SDDGAAMLTF DALSETSEFA RKWVPFCKKY 420
  421 NIEPXAPEWY FAQKIDYLKD KVQTSFVKER RAMKREYEEF KVRINGLVAK AQKVPEEGWI 480
  481 MQDGTPWPGN NTRDHPGMIQ VFLGHSGGLD VEGNELPRLV YVSREKRPGF QHHKKAGAMN 540
  541 ALVRVSAVLT NGQYMLNLDC DHYINNSKAL REAMCFLMDP NLGRNVCYVQ FPQRFDGIDR 600
  601 NDRYANRNTV FFDINLRGLD GIQGPVYVGT GCVFNRTALY GYEPPVKKKK PGFFSSLCGG 660
  661 RKKTSKSKKS SEKKKSHRHA DSSVPVFNLE DIEEGIEGSQ FDDEKSLIMS QMSLEKRFGQ 720
  721 SSVFVASTLM EYGGVPQSAT PESLLKEAIH VISCGYEDKT DWGTEIGWIY GSVTEDILTG 780
  781 FKMHARGWRS IYCMPKRPAF KGSAPINLSD RLNQVLRWAL GSIEILFSRH CPIWYGYGGR 840
  841 LKFLERFAYI NTTIYPLTSI PLLLYCILPA VCLLTGKFII PKISNLESVW FISLFISIFA 900
  901 TGILEMRWSG VGIDEWWRNE QFWVIGGISA HLFAVFQGLL KVLAGIDTSF TVTSKATDEE 960
  961 GDFAELYMFK WTTLLIPPTT ILIINLVGVV AGISYAINSG YQSWGPLFGK LFFAFWVIVH1020
 1021 LYPFLKGLMG KQNRTPTIVV VWAILLASIF SLMWVRIDPF TTRVTGPDIA KCGINC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle