YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|929959
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSANSPKTA QIARDDIAKK METTKINDEN QAPNGLFLKS KKVLGMSQSL NITDDSLVSK  60
   61 SPKKQQKKTA KQLNEEEPLL RDNPRRFVVF PIQYNDIWQM YKKAEASFWT AEEVDLSKDI 120
  121 SDWEKLKSEE KHFVSHVLAF FAASDGIVNE NLVERFSKEV QVTEARCFYG YQIAVENIHS 180
  181 EMYSLLIDTY VKDPTERDFL FNAIETMPCV KEKADWALRW INDEQSSFGE RVVAFAAVEG 240
  241 IFFSGSFASI FWLKKRGVMP GLTFSNELIS RDEGLHCDFA CLMFSHLKNK PSQERVYDII 300
  301 RDAVRIEQSF LTEALPVNLI GMNCKLMAQY IEFVADRLLL ELGCPKIWNV ENPFDFMDNI 360
  361 SLEGKTNFFE KRVGEYQKMG VMSSQSGGGS HQFSLEEDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	231	0.95
Transmembrane Helix	232	253	0.68
Cytoplasmic	254	399	0.69