YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4630792
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.92
Transmembrane Helix	13	32	0.91
Non-Cytoplasmic	33	43	0.76
Transmembrane Helix	44	65	0.89
Cytoplasmic	66	85	0.85
Transmembrane Helix	86	107	0.88
Non-Cytoplasmic	108	183	0.94
Transmembrane Helix	184	203	0.95
Cytoplasmic	204	211	0.89
Transmembrane Helix	212	234	0.90
Non-Cytoplasmic	235	260	0.90
Transmembrane Helix	261	282	0.89
Cytoplasmic	283	293	0.84
Transmembrane Helix	294	316	0.88
Non-Cytoplasmic	317	344	0.92
Transmembrane Helix	345	367	0.81
Cytoplasmic	368	393	0.87
Transmembrane Helix	394	417	0.90
Non-Cytoplasmic	418	424	0.84
Transmembrane Helix	425	448	0.93
Cytoplasmic	449	468	0.96
Transmembrane Helix	469	490	0.94
Non-Cytoplasmic	491	505	0.93
Transmembrane Helix	506	528	0.90
Cytoplasmic	529	567	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTRTRETWG KKIDFLLSVV GFAVDLANVW RFPYLCYKNG GGAFLIPYTL FLIIAGMPLF  60
   61 YMELALGQFN REGAATVWKI CPFFKGVGYA VILIALYVGF YYNVIIAWSL YYLFASFTLN 120
  121 LPWTNCGHAW NSPNCTDPKL LNASVLGDHT KYSKYKFTPA AEFYERGVLH LHESSGIHDI 180
  181 GLPQWQLLLC LMVVIVVLYV SLWKGVKTSG KVVWITATLP YFVLFVLLVH GVTLPGASNG 240
  241 INAYLHIDFY RLKEATVWID AATQIFFSLG AGFGVLIAFA SYNKFDNNCY RDALLTSTIN 300
  301 CVTSFISGFA IFSILGYMAH EHKVKIEDVA TEGAGLVFVL YPEAISTLSG STFWAVLFFL 360
  361 MLLALGLDSS MGGMEAVITG LADDFQVLKR HRKLFTCAVT LGTFLLAMFC ITKGGIYVLT 420
  421 LLDTFAAGTS ILFAVLMEAI GVSWFYGVDR FSNDIQQMMG FKPGLYWRLC WKFVSPAFLL 480
  481 FVVVVSIINF KPLTYDDYVY PPWANWVGWG IALSSMILVP AYVIYKFFSI RGSLWERVAY 540
  541 GITPENEHHL VAQRDVRQFQ LRHWLAI