YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33339150
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.93
Transmembrane Helix	7	28	0.89
Cytoplasmic	29	40	0.79
Transmembrane Helix	41	60	0.93
Non-Cytoplasmic	61	70	0.82
Transmembrane Helix	71	92	0.85
Cytoplasmic	93	99	0.85
Transmembrane Helix	100	121	0.91
Non-Cytoplasmic	122	130	0.80
Transmembrane Helix	131	152	0.91
Cytoplasmic	153	461	0.99
Transmembrane Helix	462	480	0.75
Non-Cytoplasmic	481	491	0.64
Transmembrane Helix	492	513	0.83
Cytoplasmic	514	528	0.56
Transmembrane Helix	529	563	0.70
Non-Cytoplasmic	564	581	0.54
Transmembrane Helix	582	605	0.90
Cytoplasmic	606	607	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLLDFYHV MTAVVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIS  60
   61 TNNPYTMNLR FIAADTLQKL IVLAVLAVWS NISKRGCLEW TITLFSLSTL PNTLVMGIPL 120
  121 LKGMYGEFSG SLMVQIVVLQ CIIWYTLMLF MFEYRGARML ISEQFPDTAG SIVSIHVDSD 180
  181 IMSLDGRQVL ETEAEIKEDG KLHVTVRKSN ASRSDIFSRR SVGLSSTTPR PSNLTNAEIY 240
  241 SLQSSRNPTP RGSSFNHTDF YSMMAAGGRN SNFGSSDVYG LSASRGPTPR PSNYEEDGGG 300
  301 KPRFHYNAAA GGNAGHYPVP NPGMFSPTGS KNAQPNAKKS ANGNGVVAQK TEEGNRDLHM 360
  361 FVWSSSASPV SDVFGGNHEF GGNHDQKDVR LAVSPGKVEG RRENQEEYAE REDFSFGNRE 420
  421 ILNNNNGGAE KVGDIKPKTM PPTSVMTRLI LIMVWRKLIR NPNTYSSLIG LTWSLVSFRW 480
  481 NVEMPAIVAK SISILSDAGL GMAMFSLGLF MALQPRIIAC GNTIAAFSMA VRFLTGPAVM 540
  541 AVASIAVGLR GVLLRVAIVQ AALPQGIVPF VFAKEYNVHP DILSTGVIFG MLIALPITLV 600
  601 YYILLGI