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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14278974
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSEKGPGA SSDDIQFDTE SAMTITGEET PDKESSNLKG NDWRMMTKLQ DDNDRNLAAG  60
   61 FKKQELGITW RDLSVQVTSS EAAVNETVLS QFNFPTIIKE SRRKLPLRTI LNKSHGCVKP 120
  121 GEMLLVLGRP GSGCTTLLKI LANRRGGFKS VEGDVRFGSM QPKEAENFRG QIVMNTEEEI 180
  181 FFPSLTVGQT MDFATRLKVP FHLPDGMTAL EYQEASKKFL LESVGISHTE DTKVGNEYVR 240
  241 GVSGGERKRV SIIECMATRG SVFCWDQSTR GLDASTALEW TKAIRAMTDT LNLSTVVTLY 300
  301 QAGNGIYDLF DKVLVLDEGE QIFYGTREQA RPFMEDAGFI CREGSNIADY LTGVTVPTER 360
  361 RIRDGFESRF PRNAEAVRAE YEKSPIYTQM IAEYSYPESD LARERTEEFK QGVAFETSKN 420
  421 LPKNSPFTVG FVDQVKICVQ RQYQILWGDK GTFIIKQVAT LCQALIAGSL FYNAPDNSGG 480
  481 LFVKSGALFF SLLYNSLLAM SEVNESFSGR PVLIKHKGFA YFHPAAFCLA QIAADIPVLL 540
  541 FQISMFGLVI YFMVGLSMSA GAFFSYWIIV FTTTMAMTAL FRAVGALFST FDGASKVSGS 600
  601 LIMFTVLYTG YMIPKPTMHP WLGWIFWIDP LAYGFEALLS IEFHDKTFIP CVGKNLIPTG 660
  661 PGYENAQAHQ ACAGVAGAIS GQNFVVGDNY LASLSYSHSH VWRNFGINWA WWVLFVAVTM 720
  721 VATSNWQTPS ESGSTLVIPR EYLHKHVQNQ QKDEEGQSLG KHVSQTKDEA PKSDNKLVRN 780
  781 TSVFTWKNLS YTVQTPSGDR LLLDNVHGWV KPGMLGALMG SSGAGKTTLL DVLAQRKTEG 840
  841 TIKGSIMVDG RPLPVSFQRS AGYVEQLDIH ERMATVRESL EFSALLRQPA TIPREEKLAY 900
  901 VDVIIDLLEL HDLADSMIGS VGAGLSVEQR KRVTIGVELV SKPSILIFLD EPTSGLDGQS 960
  961 AYNTVRFLRR LADAGQAVLV TVHQPSAQLF AEFDQLLLLA KGGKTVYFGP IGENSQDIKS1020
 1021 YFSRYGAPCP SETNPAEHMI DVVSGQLSQG RDWNKVWMES PEHSAMLKEL DEIIETAASK1080
 1081 PQATTDDGRE FACTLWEQTS LVLKRTSTAL YRNSDYINNK FALHISSGLV VGFSFWKIGD1140
 1141 SVADLQSVLF FVFNAIFVAP GVINQLQPTF LERRDLFEAR EKKAKMYSWK AFTIALIVSE1200
 1201 FPYLVVCAAL FFNCWYWTAG MTVDSSKSGS MFFVFFLYEF LYTGIGQFIA AYAPNAQMAA1260
 1261 MTNPLILGTM ISFCGVLVPY AQIVSFWRYW MYWINPFNYL MGSLLVFGLF DREVHCKEQE1320
 1321 FAKFDAPNGT TCGEYLSEFM QTIGARMNLT NPEATEGCRV CEYTRGSDYL FTINLKDYYY1380
 1381 GWRDAGIVAL FVVSSYGLVF GLMKLRTKAS KTAQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle