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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|14669834
Protein type: Transmembrane
Type Confidence: 0.63
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHAKDQPLF DDERNQSAGS GFKNTLQRDP LVEARSAIRK NSSSAPVRRR ISRACDQCNQ  60
   61 LRTKCDGQHP CAHCIEFGLT CEYARERKKR GKASKKDLAA AAAAATHGSN GHSGQANASL 120
  121 MAERTSEDSR PAQDVNGRYD STFESHHISS QPSHMQHANN AGISGLHDSQ TAPSHSQPSL 180
  181 GTTIDAMHLG HFNTLNDSGR PAMSMSDLRS LPPSVLPPQG LSSGYNASAF ALVNPQEPGS 240
  241 PANQFRLGSS AENPTAPFLG LSPPGQSPGW LPLPSPSPAN FPSFSLHPFS STLRYPVLQP 300
  301 VLPHIASIIP QSLACDLLDV YFHSSSPSHL SPSSPYVVGY IFRKQSFLHP TKPRLCSSGL 360
  361 LASMLWVAAQ TSEAPFLTSP PSARGRVCQK LLELTIGLLR PLVHGPATGE ASPNYAANMV 420
  421 INGVALGGFG VSMDQLGAQS SATGAVDDVA TYVHLATVVS ASEYKAASMR WWTAAWSLAR 480
  481 ELKLGRELPP NVSHARQDGE RDGDGEADRR HPPTLITSLG HGPGSSGINV TEEEREERRR 540
  541 LWWLLYATDR HLALCYNRPL TLLDKECGGL LQPMNDDLWQ VGDFAAAAYR QVGPPVECTG 600
  601 HSMYGYFLPL MTILGGIVDL HHAENHPRFG LAFRNSPEWE RQVQDVTRQL DTYGRSLKEF 660
  661 EARYTSNLTL GTAENEPAVE GAHLDHTSPS GRSSSTVGSR VSGSIMHTRM VVAYGTHIMH 720
  721 VLHILLAGKW DPVNLLEDHD LWISSESFVS AMSHAVGAAE AAAEILEHDP DLSFMPFFFG 780
  781 IYLLQGSFLL LLAADKLQGD ASPSVVRACE TIVRAHEACV VTLNTEYQRT FRKVMRSALA 840
  841 QVRGRIPEDF GEQQQRRREV LALYRWSGDG SGLAL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle