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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5669544
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTKYLTDRG QRLAFIETHK AMEHKKESEK ELQRTQKLLD SILPNIVNNQ IRSEMYKGTD  60
   61 PTVETQFNKL YVYPMDNVSI LFADIKGFTE LASKTSAQQL VKILNDLFAR FDRIAEDNHC 120
  121 LRVKLLGDCY YCVSQFESDN WKTRPDHAVC SVETGLHMIK AIKDVRLHTH VDLNMRIGIH 180
  181 SGSVMCGVLG NKKWHFDVWS NDVIIANHME SGGIPGRVHI SEATLKCLND AYEVEPGNGG 240
  241 CRDNHLKMLN VKTYLIKRTE PLRPKRRFGT RSSAHLAGSV ATAAPPCATP TALPKSISAS 300
  301 GSGSIGGVTA TGNDGASIDG RSLEYAATIA VPAQQPTQLL QQQQKKNISL NSLPNVVEGV 360
  361 AMDSRRIRNG CGVMGGAGGT GGGGTGPCGM STVSSPTAMM SAPLEVQLRP RNGACSIQNL 420
  421 AEAIDGKGLI IEDESTTDWI PEIPFKNLNS PEDGLNRADS ILVDTKEDHR VSVAVLDEEI 480
  481 DEFIEQNIQI NSNKEIRREY LNPWTLKFKD KSQEQKFCQL REDMFRSNML CVFVIWIFMV 540
  541 LCQVIIIPRC TRLIICLSVG TVILTFCCVL VMAEEFPGLP RCLKTNSAKL VHQRQRRTLF 600
  601 ICGVIVSMCM LSAIGLVLCP SSTYIGTADE HSRFLRMVSP YSNTSMTEKE FKLNVYLSAT 660
  661 IHHNITISTP ASGGPTPLVD ITSSGPSDEF VRSTLNALTL NLTPPLPQSH RPYTLTTNGH 720
  721 SVSLSNLSYS DASVMQSSSD VEGQCAHPEY LVFTWVLCLV SLATALKLYY LVKALMALAM 780
  781 VAFYTTLIMM KFGSGDSFSL VELSRLGMPL GVQMLILLIS FLVMVCYHAR LVEVTSRLDF 840
  841 IWKEQAEREL TNMKSNRALN DTLIKNILPD HVATYYLSDE HTDELYSKMH NLCGVMFASI 900
  901 PNFQDFYSED IDNGKACIRI LNEIICDFDE LLEEPRFASV EKIKTVGATY MAAAGLNHEH 960
  961 LRLRGETSED SVCDLVEFAF AMKQKLEEIN GDAFNNFQLR VGICSGPLVS GVIGARKPVY1020
 1021 DIWGNTVNVA SRMDSTGENW RVQVPENTAE LLCSRGYTCV KRGEIAVKGK GMMTTFYVHP1080
 1081 KGISESQLIS PVRMPAGIPL AQTPNLQRQT SHHGSFSAVV FGMLQASKRS TAIAGTPTGT1140
 1141 PSPQIRRGHR GSTFSSVRLS QKSTTVNPVR RNTTRVRGRS YRQKKSSSNN SIVTQASSSY1200
 1201 MPSFRRIDQI ETTISKSHND AL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle