YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15054462
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.99
Transmembrane Helix	99	118	0.92
Non-Cytoplasmic	119	126	0.65
Transmembrane Helix	127	147	0.87
Cytoplasmic	148	166	0.80
Transmembrane Helix	167	188	0.77
Non-Cytoplasmic	189	208	0.78
Transmembrane Helix	209	228	0.94
Cytoplasmic	229	239	0.80
Transmembrane Helix	240	262	0.87
Non-Cytoplasmic	263	289	0.91
Transmembrane Helix	290	309	0.95
Cytoplasmic	310	328	0.91
Transmembrane Helix	329	349	0.93
Non-Cytoplasmic	350	380	0.88
Transmembrane Helix	381	400	0.86
Cytoplasmic	401	427	0.90
Transmembrane Helix	428	447	0.93
Non-Cytoplasmic	448	453	0.84
Transmembrane Helix	454	477	0.89
Cytoplasmic	478	497	0.92
Transmembrane Helix	498	522	0.85
Non-Cytoplasmic	523	536	0.90
Transmembrane Helix	537	557	0.85
Cytoplasmic	558	609	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLSEDFGSS GKKETSPDSI SVRSFSAGNN LQSLTSEKSY SRDSTGNDKL IHRFVDSFKR  60
   61 AESSTTKTKQ INKNTSDLEE DVHSFTSDSD LKKSMKSRHV VMMSLGTGIG TGLLVANAKG 120
  121 LHYGGPAALV IGYVLVSFVT YFMIQAAGEM AVTYPTLPAN FNAYSSIFVS KPFGFATVWL 180
  181 YCFQWLTVLP LELITASMTV QFWNDKINAD IFILIFFVFL LFVHFFGVKA YGETEFIFNC 240
  241 CKILMIAGFI ILSVVINCGG AGNDGYIGGK YWRNPGAFAG DSSASRFKNI CYILVTAYFS 300
  301 FGGMELFALS VQEQENPRKS TPVAAKRSIY RILIIYLLTM ILIGFNVPYN DDQLMGSGGS 360
  361 ATHASPYVLA ASIHGVKVVP HIINAVILIS VISVSNSSLY AGPRLMCSLA QQGYAPKFLD 420
  421 YIDREGRPLR ALIVCSIFGT VAFVAASSKE EVVFTWLAAI AGLSELFTWT SIMLSHFRFR 480
  481 QAMKVQGRSL DELGYKATSG IWGSAYGVFF NILVFIAQFW VALAPLGNGG KCSVESFFES 540
  541 YLAAPIWLAF YLGYMIYNRD FTFLNPLDKI DLDFHRRVYD PELMRQEDLE NKEKKKHMPL 600
  601 MKKAYLFWC