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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NCPR_PIG
Protein type: Transmembrane
Type Confidence: 0.90
Topology Confidence: 0.44
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDSNVDTGT TTSEMVAEEV SLFSATDMVL FSLIVGLLTY WFIFRKKKDE VPEFSKIETT  60
   61 TSSVKDSSFV EKMKKTGRNI IVFYGSQTGT AEEFANRLSK DAHRYGMRGM AADPEEYDLS 120
  121 DLSSLPEIEN ALAVFCMATY GEGDPTDNAQ DFYDWLQEAD VDLTGVKYAV FGLGNKTYEH 180
  181 FNAMGKYVDK RLEQLGAQRI FDLGLGDDDG NLEEDFITWR EQFWPAVCEH FGVEATGEES 240
  241 SIRQYELVVH TDMDTAVVYT GEMGRLKSYE NQKPPFDAKN PFLAVVTTNR KLNQGTERHL 300
  301 MHLELDISDS KIRYESGDHV AVYPANDSAL VNQLGEILGT DLDIVMSLNN LDEESNKRHP 360
  361 FPCPTTYRTA LTYYLDITNP PRTNVLYELA QYASEPSEQE QLRKMASSSG EGKELYLSWV 420
  421 VEARRHILAI LQDYPSLRPP IDHLCERLPR LQARYYSIAS SSKVHPNSVH ICAVVVEYET 480
  481 KSGRVNKGVA TSWLRAKEPA GENGRRALVP MFVRKSQFRL PFKATTPVIM VGPGTGVAPF 540
  541 IGFIQERAWL QEQGKEVGET LLYYGCRRSD EDYLYREELA QFHAKGALTR LSVAFSREQP 600
  601 QKVYVQHLLK RDKEHLWKLI HDGGAHIYIC GDARNMARDV QNTFCDIVAE QGPMEHAQAV 660
  661 DYVKKLMTKG RYSLDVWS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle