YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10432587
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTPTRYPS PGPTPSKKAA AALASFTFDS PTKKSAKKVV VDDKRRSTSP ASLEENEDQC  60
   61 VEEDTTQTTS AEELAALQKR FVGEVELPES EEPLLLESRR RFVLFPIQYH EIWQMYKKAE 120
  121 ASFWTAEEMD LSKDLHDWNN RLNDSERFFI SRVLAFFAAS DGIVNENLLE RFSNEVQVAE 180
  181 ARCFYGFQIM MENIHSETYS LLIDTYIKDP VERDFLFDAI ETIPCIKRKA EWALRWISDE 240
  241 HSVFGERLVA FAAVEGIFFS GSFASIFWMK KRGLMPGLAF SNELISRDEG MHTDFACLLF 300
  301 SHLRRRPHPD TVERIIKEAV AIEQEFLTDA LPVSLIGMNA TLMCQYIEFV ADRLLVALGN 360
  361 KKLYNSTNPF DFMDMISLQG KTNFFEKRVS DYSKAGVNHS GDNTTTQASK TFVLDEDF

Type	Start	End	Confidence
Non-Cytoplasmic	1	247	0.89
Transmembrane Helix	248	269	0.69
Cytoplasmic	270	418	0.69