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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5821298
Protein type: Transmembrane
Type Confidence: 0.68
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGVRNIYHH SYTLSFLLVF FVLILFRPAF SINTLSSTES LTISSNRTLV SPGNVFELGF  60
   61 FKTTSSSRWY LGIWYKKFPY RTYVWVANRD NPLSNDIGTL KISGNNLVLL DHSNKSVWST 120
  121 NVTRGNERSP VVAELLDNGN FVMRDSNSNN ASQFLWQSFD YPTDTLLPEM KLGYDLKTGL 180
  181 NRFLTSWRSS DDPSSGDYSY KLEPGRLPEF YLWKGNIRTH RSGPWSGIQF SGIPEDQRLS 240
  241 YMVYNFTENR EEVAYTFQMT NNSFYSILTI SSTGYFERLT WAPSSVVWNV FWSSPNHQCD 300
  301 MYRICGPYTY CDVNTSPSCN CIQGFNPENV QQWALRIPIS GCKRRTRLSC NGDGFTRMKN 360
  361 MKLPDTTMAI VDRSIGVKEC KKRCLGDCNC TAFANADIRN GGTGCVIWTG ELADIRNYAD 420
  421 GGQDLYVRLA AADLVKKRNA NWKIISLIVG VSVVLLLLLL IMFCLWKRKQ NRAKAMATSI 480
  481 VNQQRNQNVL MNGMTQSNKR QLSRENKADE FELPLIELEA VVKATENFSN CNELGQGGFG 540
  541 IVYKGMLDGQ EVAVKRLSKT SLQGIDEFMN EVRLIARLQH INLVRILGCC IEADEKILIY 600
  601 EYLENSSLDY FLFGKKRSSN LNWKDRFAIT NGVARGLLYL HQDSRFRIIH RDLKPGNILL 660
  661 DKYMIPKISD FGMARIFARD ETQARTDNAV GTYGYMSPEY AMDGVISEKT DVFSFGVIVL 720
  721 EIVSGKRNRG FYQVNPENNL LSYAWSHWAE GRALEIVDPV IVDPLASLPS TFQPKEVLKC 780
  781 IQIGLLCIQE RAEHRPTMSS VVWMLGSEAT EIPQPKPPVY CLIASYYANN PSSSGQFDDD 840
  841 ESWTVNKYTC SVIDAR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle