YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3721864
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMWASLDAL WEMPAKKRIF GAVLLFSWTV YLWETFLAQR QRRIYKTTTH VPPELGQIMD  60
   61 SETFEKSRLY QLDKSTFSFW SGLYSETEGT LILLFGGIPY LWRLSGRFCG YAGFGPEYEI 120
  121 TQSLVFLLLA TLFSALTGLP WSLYNTFVIE EKHGFNQQTL GFFMKDAIKK FVVTQCILLP 180
  181 VSSLLLYIIK IGGDYFFIYA WLFTLVVSLV LVTIYADYIA PLFDKFTPLP EGKLKEEIEV 240
  241 MAKSIDFPLT KVYVVEGSKR SSHSNAYFYG FFKNKRIVLF DTLLEEYSVL NKDIQEDSGM 300
  301 EPRNEEEGNS EEIKAKVKNK KQGCKNEEVL AVLGHELGHW KLGHTVKNII ISQMNSFLCF 360
  361 FLFAVLIGRK ELFAAFGFYD SQPTLIGLLI IFQFIFSPYN EVLSFCLTVL SRRFEFQADA 420
  421 FAKKLGKAKD LYSALIKLNK DNLGFPVSDW LFSMWHYSHP PLLERLQALK TMKQH

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.81
Transmembrane Helix	18	37	0.88
Cytoplasmic	38	76	0.88
Transmembrane Helix	77	102	0.73
Non-Cytoplasmic	103	122	0.81
Transmembrane Helix	123	144	0.90
Cytoplasmic	145	170	0.84
Transmembrane Helix	171	189	0.95
Non-Cytoplasmic	190	196	0.76
Transmembrane Helix	197	219	0.91
Cytoplasmic	220	348	0.95
Transmembrane Helix	349	368	0.90
Non-Cytoplasmic	369	384	0.76
Transmembrane Helix	385	407	0.80
Cytoplasmic	408	475	0.90