YRC Public Data Repository - Protein Structure Prediction

Protein:	PRPS1_RAT
Organism:	Rattus norvegicus
Length:	318 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRPS1_RAT.

Description	E-value	Query Range	Subject Range
gi\|68372393, gi\|... - gi\|68372393\|ref\|XP_685452.1\| PREDICTED: similar to Ribose-phosphate pyrophosphokinase I -like isofor...	0.0	[1..318]	[1..318]
gi\|224098594 - gi\|224098594\|ref\|XP_002187809.1\| PREDICTED: similar to phosphoribosyl pyrophosphate synthetase 1 iso... gi\|50745642 - gi\|50745642\|ref\|XP_420181.1\| PREDICTED: hypothetical protein [Gallus gallus] gi\|542151400\|ref... - PREDICTED: ribose-phosphate pyrophosphokinase 1 isoform X2 [Zonotrichia albicollis]	0.0	[1..318]	[1..318]
gi\|28422233 - gi\|28422233\|gb\|AAH44286.1\| Prps1 protein [Xenopus laevis]	0.0	[1..318]	[9..326]
gi\|38511773, gi\|... - gi\|45361007\|ref\|NP_989140.1\| similar to phosphoribosyl pyrophosphate synthetase 1 [Xenopus (Silurana...	0.0	[1..318]	[1..318]
gi\|62897899 - gi\|62897899\|dbj\|BAD96889.1\| phosphoribosyl pyrophosphate synthetase 1 variant [Homo sapiens]	0.0	[1..318]	[1..318]
gi\|57527447, gi\|... - gi\|57527447\|ref\|NP_001009694.1\| ribose-phosphate pyrophosphokinase I -like [Rattus norvegicus], gi\|5...	0.0	[1..318]	[1..318]
gi\|33303737 - gi\|33303737\|gb\|AAQ02382.1\| phosphoribosyl pyrophosphate synthetase 1 [synthetic construct]	0.0	[1..317]	[1..317]
PRPS1_MOUSE - Ribose-phosphate pyrophosphokinase 1 OS=Mus musculus GN=Prps1 PE=1 SV=3	0.0	[1..318]	[1..318]
gi\|76659836 - gi\|76659836\|ref\|XP_617865.2\| PREDICTED: similar to Ribose-phosphate pyrophosphokinase II (Phosphorib...	0.0	[1..318]	[28..345]

Back

Predicted Domain #1

Region A:
Residues: [1-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNIKIFSGS SHQDLSQKIA DRLGLELGKV VTKKFSNQET CVEIGESVRG EDVYIVQSGC  60
   61 GEINDNLMEL LIMINACKIA SASRVTAVIP CFPYARQDKK DKSRAPISAK LVANMLSVAG 120
  121 ADHIITMDLH ASQIQGFFDI PVDNLYAEPA VLKWIRENIS EWRNCTIVSP DAGGAKRVTS 180
  181 IADRLNVDFA LIHKERKKAN EVDRMVLVGD VKDRVAILVD DMADTCGTIC HAADKLLSAG 240
  241 ATRVYAILTH GIFSGPAISR INNACFEAVV VTNTIPQEDK MKHCSKIQVI DISMILAEAI 300
  301 RRTHNGESVS YLFSHVPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	2h06A
Description:	No description for 2h06A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits