YRC Public Data Repository - Protein Structure Prediction

Protein:	CC85B_MOUSE
Organism:	Mus musculus
Length:	202 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CC85B_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|26352307, gi\|... - gi\|56237932\|emb\|CAI25984.1\| coiled-coil domain containing 85A [Mus musculus], gi\|26352317\|dbj\|BAC397...	256.0	[0..8]	[162..31]
gi\|109501121, gi... - gi\|109501121\|ref\|XP_001064762.1\| PREDICTED: similar to Delta-interacting protein A (Hepatitis delta ...	252.0	[0..8]	[162..110]
gi\|15620883 - gi\|15620883\|dbj\|BAB67805.1\| KIAA1912 protein [Homo sapiens]	250.0	[0..8]	[162..72]
gi\|114577462 - gi\|114577462\|ref\|XP_525759.2\| PREDICTED: coiled-coil domain containing 85A [Pan troglodytes]	248.0	[0..8]	[162..36]
gi\|76668481 - gi\|76668481\|ref\|XP_604156.2\| PREDICTED: similar to Delta-interacting protein A (Hepatitis delta anti...	247.0	[0..8]	[162..30]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEAGGLEE LTDEEMAALG KEELVRRLRR EEAARLAALV QRGRLMQEVN RQLQGHLGEI  60
   61 RELKQLNRRL QAENRELRDL CCFLDSERQR GRRAARQWQL FGTQASRAVR EDLGGCWQKL 120
  121 AELEGRQEEL LRENLALKEL CLALGEEWGP RGGPGGAVGS GAGPTPELAL PPCGPRDLGD 180
  181 GSSSTGSVGS PDQLPLACSP DD

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.69
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits