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View Structure Prediction Details

Protein: gi|21704152, gi|...
Organism: Mus musculus
Length: 227 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21704152, gi|....

Description E-value Query
Range
Subject
Range
RT35_MOUSE - 28S ribosomal protein S35, mitochondrial OS=Mus musculus GN=Mrps35 PE=1 SV=2
351.0 [0..1] [227..94]
MRPS35 - mitochondrial ribosomal protein S35
346.0 [0..1] [226..97]
gi|34858606, gi|... - gi|34858606|ref|XP_216306.2| PREDICTED: similar to mitochondrial ribosomal protein S35 [Rattus norve...
346.0 [0..1] [227..94]
gi|73997238 - gi|73997238|ref|XP_534855.2| PREDICTED: similar to mitochondrial ribosomal protein S35 [Canis famili...
342.0 [0..1] [226..125]
gi|109096009 - gi|109096009|ref|XP_001103832.1| PREDICTED: similar to mitochondrial ribosomal protein S35 [Macaca m...
341.0 [0..1] [226..97]

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Predicted Domain #1
Region A:
Residues: [1-43]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKEGNLELL KIPNFLHLTP VAIKRHCAAL KDFCTEWPAA LDS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [44-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DEKCEEHFPV EIDTADYVSS GPSIRNPKAR AVTLRVKLSS LNLDNHAKKK LIKLVGERYC  60
   61 KATDVLTITT DRCPLKRQNY DYAVYLLTVL YHESWKT

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.01
Match: 2jvaA
Description: No description for 2jvaA was found.

Predicted Domain #3
Region A:
Residues: [141-227]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDWENSKTEE DMDEYVWAKS SSENSVLQTL LQMRAAESSV APSREELLGT KEVEDYQKCV  60
   61 VRLKNEGENE ASLAQYKESV KRLLNLA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle