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View Structure Prediction Details

Protein: RL15_MOUSE
Organism: Mus musculus
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL15_MOUSE.

Description E-value Query
Range
Subject
Range
gi|61367624, gi|... - gi|61367624|gb|AAX43024.1| ribosomal protein L15 [synthetic construct], gi|54696210|gb|AAV38477.1| r...
2.0E-96 [1..204] [1..204]
gi|61837947, gi|... - gi|76671813|ref|XP_870687.1| PREDICTED: similar to ribosomal protein L15 isoform 2 [Bos taurus], gi|...
2.0E-96 [1..204] [1..204]
gi|12006350 - gi|12006350|gb|AAG44837.1| 60S ribosomal protein L15 [Homo sapiens]
4.0E-96 [1..204] [1..204]
gi|12846287 - gi|12846287|dbj|BAB27107.1| unnamed protein product [Mus musculus]
5.0E-96 [1..204] [1..204]
gi|55729832 - gi|55729832|emb|CAH91644.1| hypothetical protein [Pongo abelii]
gi|55729832|emb|... - hypothetical protein [Pongo pygmaeus]
6.0E-96 [1..204] [1..204]

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Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAYKYIQEL WRKKQSDVMR FLLRVRCWQY RQLSALHRAP RPTRPDKARR LGYKAKQGYV  60
   61 IYRIRVRRGG RKRPVPKGAT YGKPVHHGVN QLKFARSLQS VAEERAGRHC GALRVLNSYW 120
  121 VGEDSTYKFF EVILIDPFHK AIRRNPDTQW ITKPVHKHRE MRGLTSAGRK SRGLGKGHKF 180
  181 HHTIGGSRRA AWRRRNTLQL HRYR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.30103
Match: 1s1iL
Description: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle