YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|12844128, gi|...
Organism: Mus musculus
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12844128, gi|....

Description E-value Query
Range
Subject
Range
CC90B_MOUSE - Coiled-coil domain-containing protein 90B, mitochondrial OS=Mus musculus GN=Ccdc90b PE=1 SV=1
268.0 [0..1] [256..1]
CC90B_RAT - Coiled-coil domain-containing protein 90B, mitochondrial OS=Rattus norvegicus GN=Ccdc90b PE=2 SV=1
254.0 [0..1] [256..1]
gi|114639579 - gi|114639579|ref|XP_001175206.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes]
250.0 [0..1] [254..1]
CCDC90B - coiled-coil domain containing 90B
250.0 [0..1] [254..1]
gi|109108128 - gi|109108128|ref|XP_001098899.1| PREDICTED: hypothetical protein [Macaca mulatta]
249.0 [0..1] [254..1]

Back

Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSRWIWRFL RPDGCGIRWT STPHGRLSPA LRRGFLTTTT KSDYDRRPVD ITPLEQRKLT  60
   61 FDTHALVQDL ETHGFDKTQA QTIVSVLSTL SNVSLDTIYK EMVTKAQQEI TVQQLMAHLD 120
  121 SIRKDMVILE KSEFANLRAE NEKMKIELDQ VKQQLTNETS RIRADNKLDI NLERSRVTDM 180
  181 FTDQEKQLIE ATNEFAKKDT QTKSIISETS NKIDTEIASL KTLMESSKLE TIRYLAASVF 240
  241 TCLAIALGFY RFWKEN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.30103
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle