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View Structure Prediction Details

Protein: CG1399-PA
Organism: Drosophila melanogaster
Length: 655 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CG1399-PA.

Description E-value Query
Range
Subject
Range
gi|22024065, gi|... - gi|22024065|ref|NP_610316.2| CG1399-PB, isoform B [Drosophila melanogaster], gi|21645603|gb|AAF59205...
343.0 [0..48] [655..792]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLMRTLCCC FGAGQSNQSS GASPAYKACP DEEPLEELVT DPERADQSPK NEIEQSLAAA  60
   61 ISDRATDEVL EALTRYRRGM GIAESPSVLL DEPQTPDIVR SRSSHDADGL IIRPGGRGSI 120
  121 LPKLGLESPT ATPHLPTKRR SLAKKVRPQS VVENLSLGHF PDLLESPSSH RSNSQLSARA 180
  181 AAGAAALVGA ANMTDS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [197-362]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAVDDGGVDE CCDSITELPS ASFQLQHLVK GRPKRAKTRA PTRPLVTTEC AGGSREIGEG  60
   61 LEHFFRPGSV TPTTLTPLVS PTSEECSSLS FVDSPTMSRD GNGHMTSEET TPILEERRPI 120
  121 KLERQSPLLK SASWATRSRS TDNLEKYSPL VGRKSPLVKM RTEGGP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [363-554]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSGSATGAEE TSMPSSNLLK ATAREDKTRS PSSDSIKSHA AGEGSVIVKT GNGILRTPIV  60
   61 LQKPRPWSVV GSEPKAGGDL ITGNGNADSS KTTPDKLEED DVEIVTFGNT CSGSIVGITP 120
  121 GIALSTSGGG SIVGITPGGA LEKKSVRELA AGLNRMELPL KPPVMPRTLL NATSVRTSTS 180
  181 STGSTSNSVS VS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [555-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTNANTSMT VLNQSQTRSR IVSSTSSTDS TETITERSTT STSSSSSSSY EKQHAKACAN  60
   61 LISNEILSMR NGQLGAKSGS CAESGGVKRI AGKEISTLFE V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle