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View Structure Prediction Details

Protein: Tm1-PB
Organism: Drosophila melanogaster
Length: 339 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Tm1-PB.

Description E-value Query
Range
Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
176.0 [0..1] [336..2514]

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Predicted Domain #1
Region A:
Residues: [1-63]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAIKKKMQA MKVDKDGALE RALVCEQEAR DANTRAEKAE EEARQLQKKI QTVENELDQT  60
   61 QEA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 2fxmA
Description: No description for 2fxmA was found.

Predicted Domain #2
Region A:
Residues: [64-339]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTLVTGKLEE KNKALQNKKK TTKMTTSIPQ GTLLDVLKKK MRQTKEEMEK YKDECEEFHK  60
   61 RLQLEVVRRE EAESEVAALN RRIQLLEEDL ERSEERLGSA TAKLSEASQA ADESERARKI 120
  121 LENRALADEE RMDALENQLK EARFLAEEAD KKYDEVARKL AMVEADLERA EERAEQGENK 180
  181 IVELEEELRV VGNNLKSLEV SEEKANQREE EYKNQIKTLN TRLKEAEARA EFAERSVQKL 240
  241 QKEVDRLEDD LVLEKERYKD IGDDLDTAFV ELILKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.221849
Match: 2tmaA
Description: Tropomyosin
Matching Structure (courtesy of the PDB):

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