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View Structure Prediction Details

Protein: emp-PB
Organism: Drosophila melanogaster
Length: 551 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for emp-PB.

Description E-value Query
Range
Subject
Range
gi|25012361 - gi|25012361|gb|AAN71290.1| RE08130p [Drosophila melanogaster]
725.0 [0..8] [551..58]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLDDILHIN NCKADCSSLS TTPNPKTDLV NMNGPKHKFC TKLSSTYLRK WWITIVVAAA  60
   61 LIIGGIVVAC EFTVLIDAVV DRMVALRPGA KTFGWWA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [98-170]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPPVEPRISL YIYNVTNADD FLSNGSKAIV DEVGPYVYSE TWEKVNIVEN DNGTLSYNLR  60
   61 KIYSFREDLS VGP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [171-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDDVVIVPNI PMLSATSQSK HAARFLRLAM ASIMDILKIK PFVQVSVGQL LWGYEDPLLK  60
   61 LAKDVVPKEQ KLPYEEFGLL YGKNGTSSDR VTVNTGVDDI RRYGIIDNFN GRTHLPHWT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [290-396]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TDACNTLAGT DGSIFPPHID HDRILHVYDK DLCRLLPLVF EKEVMTSNEV PGYRFTPPEW  60
   61 VFADVDSHPD NMCFCPAGKP SCSPNGLFNV SLCQYDSPIM LSFPHFY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [397-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LADESLRTQV EGISPPMKEK HQFFFDVQPK MGTTLRVRAR IQINLAVSQV FDIKQVANFP  60
   61 DIIFPILWFE EGIDNLPDEV TDLMRFAEQV PPKIRVALIV GLCALGVILL LLSTFCLIRN 120
  121 SHRQSTLHLE GSNYLATAQV DMNKKQNKDN QPARY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle