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View Structure Prediction Details

Protein: Chi-PB
Organism: Drosophila melanogaster
Length: 596 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Chi-PB.

Description E-value Query
Range
Subject
Range
LDB2_CHICK - LIM domain-binding protein 2 OS=Gallus gallus GN=LDB2 PE=2 SV=1
683.0 [0..211] [581..4]

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Predicted Domain #1
Region A:
Residues: [1-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQCDIQTSRR ECPIEPTTGM NRRGLNAGNT MTSQANIDDG SWKAVSEGGS MLPASNSAVL  60
   61 NPDGSNQSGF AQGGLPYNSA GNPYPPAGQS SPAGNQSIVF QNSNQPGSNT PQYTSSPAPS 120
  121 GSSTPGPVGA QNIPGNYPQS ATAGNFNGPV GGPFGSPSSG LGQFSRPASS GTPFNSGQAG 180
  181 HFSSPTVFSV GGQFNPMPPA SPFGHGGNHP MMGGPQQMER IDQGFRRHNS YFSHTEHRVF 240
  241 ELNKRLQQRN EESD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 1y0fB
Description: No description for 1y0fB was found.

Predicted Domain #2
Region A:
Residues: [255-496]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NCWWDSFTTE FFEDDARLTI LFCLEDGPKR YTIGRTLIPR FFRSIYEGGV SDLYFQLKHA  60
   61 KESFHNTSIT LDCDQCTVIT QHGKPFFTKV CADARLILEF MYDDYMRIKS WHMTIKGHRE 120
  121 LIPRSVIGTS LPPDPMLLDQ ITKNITRAGI TNSTLNYLRL CVILEPMQEL MSRHKAYALS 180
  181 PRDCLKTTLF QKWQRMVAPP GKKDPQRPPN KRRKRKGSNS GGGNNSNTPP VTNQKRSPSG 240
  241 PS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [497-596]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSLSSQDVMV VGEPTLMGGE FGEEDERLIT RLENTQYDGT NAVEHDNHTG FGHADSPISG  60
   61 SNPWSIDRAG AIPASPGNGA APQNNANISD IDKKSPIVSQ 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle