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View Structure Prediction Details

Protein: Vrp1-PE
Organism: Drosophila melanogaster
Length: 761 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Vrp1-PE.

Description E-value Query
Range
Subject
Range
gi|39592304, gi|... - gi|39592304|emb|CAE75525.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi|187020927|em...
gi|157762282 - gi|157762282|ref|XP_001673483.1| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]
293.0 [0..3] [759..1033]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLKRSSKQK MAIPPPPGPP PPPGPPPPPA MGGLKLGGAG GADARSALLS SIQKGTKLKK  60
   61 TTTVDKSGPA LSGKVCGGDG GAGIGAKRTL NNNTSTSNHN NSSSSSNGLG NGTPKLGGLF 120
  121 EGLSQMPKLK PVNGIRATPS 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGSAATTTSK STTNSSAQQR SNSPPAATSA SNASNGPMDF NTELTKHLTL KRQKQQQQQQ  60
   61 PQPPTNNTHI NATEANLRTN RGPPPQPPKS ANSNDSILER MNIPRTAPTP PFGNSSSVKA 120
  121 ASPTLSDSGS NSSGSGGGSG SVKSKAANLN ISLGNSF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [298-409]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VNSSKSTVSA STASLNSSLT SSTGSVRNLA PNKSTLFGGS SGSSSGSSSG GGYASVHKSS  60
   61 PPSTADSTPS VTPTPPPLQL PMKPAISFGK PNFAPKPPGL NQLAMANGQQ RP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [410-525]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVTRHHSMKS PRSPPAAGIV NGLVFPTQQH LGTLRGPLQF HGSESSSPNT SAGSMRCAPN  60
   61 PPKSRPSVKP PPPPTPARSF SNTNLNNIGG STMFSAVNTA LIQSSAISSQ APSPPI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [526-761]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TQPPSSSSSS NSVAALRDQF RGGAGMSNGA PSPPLPPTPA PSSNPSSASA SPKSLLRDNV  60
   61 KPIILNGGPL NPPAPPPHRS CPPPPPPQRQ SSNQDRVKYW IDKTVYSFKK ILHINRQGRH 120
  121 SGESVKVINM LNSKRNGGSG SGSAPVPPQR HSSIRPNAPS TPPTHMANAS HQFGSSSGLS 180
  181 SGSGAGAAAS VGRLVNDLET KFGKRFHNVT EFPKPPPFLN IQKVYPSRTF KATNGM

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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Created and Maintained by: Michael Riffle