YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3135665
Organism:	Drosophila melanogaster
Length:	178 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3135665.

Description	E-value	Query Range	Subject Range
gi\|25281969 - gi\|25281969\|gb\|AAN72430.1\| receptor-like protein tyrosine phosphatase gamma B-type isoform [Rattus n...	169.0	[0..1]	[174..913]
gi\|94396621 - gi\|94396621\|ref\|XP_981986.1\| PREDICTED: similar to Receptor-type tyrosine-protein phosphatase gamma ...	169.0	[0..1]	[174..1013]
gi\|115495675, gi... - gi\|84688627\|gb\|ABC61317.1\| protein tyrosine phosphatase receptor type G [Bos taurus], gi\|115495675\|r...	167.0	[0..1]	[174..907]
gi\|62089328 - gi\|62089328\|dbj\|BAD93108.1\| protein tyrosine phosphatase, receptor type, G precursor variant [Homo s...	165.0	[0..1]	[174..1038]
gi\|114587682 - gi\|114587682\|ref\|XP_001174413.1\| PREDICTED: protein tyrosine phosphatase, receptor type, G isoform 1...	165.0	[0..1]	[174..725]
gi\|73985162 - gi\|73985162\|ref\|XP_541822.2\| PREDICTED: similar to protein tyrosine phosphatase, receptor type, G pr...	165.0	[0..1]	[174..894]

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Predicted Domain #1

Region A:
Residues: [1-178]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITMRQKDL RPAPALIEYK GMKFLITDRP SDITINHYIM ELKKNNVNTV VRVCEPSYNT  60
   61 DELETQGITV KDLAFEDGTF PPQQVVDEWF EFFVVLYRYQ QNPEACVAVH CVAGLGRAPV 120
  121 LVALALIELG LKYEAAVEMI RDKRRGAINA KQLSFLEKYK PKARLKHKNG HKNSCSVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.522879
Match:	1xm2A
Description:	Crystal structure of Human PRL-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits