YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|94390799, gi\|...
Organism:	Mus musculus
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|94390799, gi|....

Description	E-value	Query Range	Subject Range
gi\|119625107, gi... - gi\|119625107\|gb\|EAX04702.1\| hCG2025760, isoform CRA_a [Homo sapiens], gi\|113415868\|ref\|XP_936693.2\| ...	195.0	[0..3]	[194..526]
gi\|109076273 - gi\|109076273\|ref\|XP_001091645.1\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 3 [Macaca mula...	195.0	[0..3]	[194..526]
gi\|114597018 - gi\|114597018\|ref\|XP_001160481.1\| PREDICTED: similar to Ten-m3 isoform 3 [Pan troglodytes]	195.0	[0..3]	[194..526]
gi\|76655599 - gi\|76655599\|ref\|XP_870167.1\| PREDICTED: similar to odd Oz/ten-m homolog 3 isoform 2 [Bos taurus]	193.0	[0..3]	[194..526]

Back

Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANSCCGSVC SEESCGQGCC QPSCCQTTCC RTTCCRPSCC VSSCCRPQCC QSLCCQPTCC  60
   61 RPSCCISSCC RPTCCRPTCC ISSCCRPTCC RPSCCISSCC RPTCCRPSCC ISSCCRPSCC 120
  121 RPSCCISSCC RPSCCRPSCC RPSCCISSCC RPSCCVSSCC RPQCCISSCC RPICCQTTCC 180
  181 RTTCYRPACS SGSCC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.13
Match:	2ob7A
Description:	No description for 2ob7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits