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View Structure Prediction Details

Protein: MRPL47
Organism: Homo sapiens
Length: 250 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MRPL47.

Description E-value Query
Range
Subject
Range
gi|109043523 - gi|109043523|ref|XP_001108605.1| PREDICTED: similar to mitochondrial ribosomal protein L47 isoform a...
374.0 [0..1] [250..1]
gi|114590523 - gi|114590523|ref|XP_001168245.1| PREDICTED: mitochondrial ribosomal protein L47 isoform 4 [Pan trogl...
373.0 [0..1] [250..1]
MRPL47 - mitochondrial ribosomal protein L47
371.0 [0..1] [250..1]
RM47_MOUSE - 39S ribosomal protein L47, mitochondrial OS=Mus musculus GN=Mrpl47 PE=1 SV=2
358.0 [0..1] [250..1]
gi|149048662, gi... - gi|81295383|ref|NP_001032260.1| mitochondrial ribosomal protein L47 [Rattus norvegicus], gi|77748242...
348.0 [0..1] [250..1]

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Predicted Domain #1
Region A:
Residues: [1-80]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAGLALLC RRVSSALKSS RSLITPQVPA CTGFFLSLLP KSTPNVTSFH QYRLLHTTLS  60
   61 RKGLEEFFDD PKNWGQEKVK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [81-163]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGAAWTCQQL RNKSNEDLHK LWYVLLKERN MLLTLEQEAK RQRLPMPSPE RLDKVVDSMD  60
   61 ALDKVVQERE DALRLLQTGQ ERA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.29
Match: 1p85W
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [164-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RPGAWRRDIF GRIIWHKFKQ WVIPWHLNKR YNRKRFFALP YVDHFLRLER EKRARIKARK  60
   61 ENLERKKAKI LLKKFPHLAE AQKSSLV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle