YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NOP56
Organism: Homo sapiens
Length: 594 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP56.

Description E-value Query
Range		 Subject
Range
gi|114680995 - gi|114680995|ref|XP_514472.2| PREDICTED: nucleolar protein 5A [Pan troglodytes]
 0.0 [2..576] [187..761]
NOP56 - NOP56 ribonucleoprotein homolog (yeast)
 0.0 [1..594] [1..594]
NOP56_PONAB - Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1
NOL5A_PONPY, NOP... - Nucleolar protein Nop56 (Nucleolar protein 5A) - Pongo pygmaeus (Orangutan), Nucleolar protein 5A - ...
 0.0 [1..594] [1..594]
NOP56_MACFA - Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1
 0.0 [1..594] [1..594]
gi|73991990 - gi|73991990|ref|XP_851724.1| PREDICTED: similar to nucleolar protein 5A [Canis familiaris]
 0.0 [1..576] [1..577]
gi|68534600, gi|... - gi|71143106|ref|NP_001020903.1| nucleolar protein 5A [Rattus norvegicus], gi|68534600|gb|AAH99149.1|...
 0.0 [1..570] [1..568]
gi|74145700 - gi|74145700|dbj|BAE24185.1| unnamed protein product [Mus musculus]
 0.0 [1..501] [1..496]

Back

Predicted Domain #1
Region A:
Residues: [1-451] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLHVLFEH AVGYALLALK EVEEISLLQP QVEESVLNLG KFHSIVRLVA FCPFASSQVA  60
   61 LENANAVSEG VVHEDLRLLL ETHLPSKKKK VLLGVGDPKI GAAIQEELGY NCQTGGVIAE 120
  121 ILRGVRLHFH NLVKGLTDLS ACKAQLGLGH SYSRAKVKFN VNRVDNMIIQ SISLLDQLDK 180
  181 DINTFSMRVR EWYGYHFPEL VKIINDNATY CRLAQFIGNR RELNEDKLEK LEELTMDGAK 240
  241 AKAILDASRS SMGMDISAID LINIESFSSR VVSLSEYRQS LHTYLRSKMS QVAPSLSALI 300
  301 GEAVGARLIA HAGSLTNLAK YPASTVQILG AEKALFRALK TRGNTPKYGL IFHSTFIGRA 360
  361 AAKNKGRISR YLANKCSIAS RIDCFSEVPT SVFGEKLREQ VEERLSFYET GEIPRKNLDV 420
  421 MKEAMVQAEE AAAEITRKLE KQEKKRLKKE K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 82.045757
Match: 2nnwA
Description: No description for 2nnwA was found.

Predicted Domain #2
Region A:
Residues: [452-594] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KRLAALALAS SENSSSTPEE CEEMSEKPKK KKKQKPQEVP QENGMEDPSI SFSKPKKKKS  60
   61 FSKEELMSSD LEETAGSTSI PKRKKSTPKE ETVNDPEEAG HRSGSKKKRK FSKEEPVSSG 120
  121 PEEAVGKSSS KKKKKFHKAS QED

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.41
Match: 2j63A
Description: No description for 2j63A was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle