YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5915912, gi\|2...
Organism:	Homo sapiens
Length:	478 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5915912, gi|2....

Description	E-value	Query Range	Subject Range
gi\|4589580 - gi\|4589580\|dbj\|BAA76812.1\| KIAA0968 protein [Homo sapiens]	512.0	[0..1]	[478..50]
gi\|60499733 - gi\|60499733\|gb\|AAX22059.1\| Camuialpha [synthetic construct]	508.0	[0..1]	[478..247]
gi\|56207102, gi\|... - gi\|56207102\|emb\|CAI25262.1\| calcium/calmodulin-dependent protein kinase II, beta [Mus musculus], gi\|...	507.0	[0..1]	[476..1]
gi\|117616246 - gi\|117616246\|gb\|ABK42141.1\| calmodulin-dependent protein kinase II alpha [synthetic construct] KCC2A_RAT - Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Rattus norvegicus GN=Camk2a PE=... KCC2A_MOUSE - Calcium/calmodulin-dependent protein kinase type II subunit alpha OS=Mus musculus GN=Camk2a PE=1 SV=... gi\|115495299, gi... - gi\|76623452\|ref\|XP_877000.1\| PREDICTED: similar to Calcium/calmodulin-dependent protein kinase type ...	503.0	[0..1]	[478..1]
gi\|82953430\|ref\|... - PREDICTED: calcium/calmodulin-dependent protein kinase II gamma isoform 2 [Mus musculus] gi\|73952973 - gi\|73952973\|ref\|XP_863126.1\| PREDICTED: similar to calcium/calmodulin-dependent protein kinase II ga...	502.0	[0..1]	[476..1]

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Predicted Domain #1

Region A:
Residues: [1-325]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATITCTRFT EEYQLFEELG KGAFSVVRRC VKVLAGQEYA AKIINTKKLS ARDHQKLERE  60
   61 ARICRLLKHP NIVRLHDSIS EEGHHYLIFD LVTGGELFED IVAREYYSEA DASHCIQQIL 120
  121 EAVLHCHQMG VVHRDLKPEN LLLASKLKGA AVKLADFGLA IEVEGEQQAW FGFAGTPGYL 180
  181 SPEVLRKDPY GKPVDLWACG VILYILLVGY PPFWDEDQHR LYQQIKAGAY DFPSPEWDTV 240
  241 TPEAKDLINK MLTINPSKRI TAAEALKHPW ISHRSTVASC MHRQETVDCL KKFNARRKLK 300
  301 GAILTTMLAT RNFSGGKSGG NKKSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	83.0
Match:	2v7oA
Description:	No description for 2v7oA was found.

Predicted Domain #2

Region A:
Residues: [326-478]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVKESSESTN TTIEDEDTKV RKQEIIKVTE QLIEAISNGD FESYTKMCDP GMTAFEPEAL  60
   61 GNLVEGLDFH RFYFENLWSR NSKPVHTTIL NPHIHLMGDE SACIAYIRIT QYLDAGGIPR 120
  121 TAQSEETRVW HRRDGKWQIV HFHRSGAPSV LPH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	1hkxA
Description:	Association donain of calcium/calmodulin-dependent protein kinase type II alpha subunit, CAMK2A
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits